Strain identifier
BacDive ID: 23198
Type strain: 
Species: Chryseomicrobium amylolyticum
Strain Designation: JC16
Strain history: <- C. Sasikala, Centre Environment, Inst. Sci. and Technol., J. N. T. Univ., Hyderabad, India; JC 16 <- P. A. Kumar
NCBI tax ID(s): 558165 (species)
version 8.1 (current version)
General
@ref: 19359
BacDive-ID: 23198
DSM-Number: 23442
keywords: 16S sequence, Bacteria, aerobe, Gram-positive, motile, rod-shaped
description: Chryseomicrobium amylolyticum JC16 is an aerobe, Gram-positive, motile bacterium that was isolated from contaminant from an anoxygenic phototrophic culture obtained from a semi-arid tropical soil.
NCBI tax id
- NCBI tax id: 558165
- Matching level: species
strain history
- @ref: 19359
- history: <- C. Sasikala, Centre Environment, Inst. Sci. and Technol., J. N. T. Univ., Hyderabad, India; JC 16 <- P. A. Kumar
doi: 10.13145/bacdive23198.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Chryseomicrobium
- species: Chryseomicrobium amylolyticum
- full scientific name: Chryseomicrobium amylolyticum Raj et al. 2013
@ref: 19359
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Planococcaceae
genus: Chryseomicrobium
species: Chryseomicrobium amylolyticum
full scientific name: Chryseomicrobium amylolyticum Raj et al. 2013
strain designation: JC16
type strain: yes
Morphology
cell morphology
- @ref: 30799
- gram stain: positive
- cell length: 2.5 µm
- cell width: 1 µm
- cell shape: rod-shaped
- motility: yes
pigmentation
- @ref: 30799
- production: yes
Culture and growth conditions
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30799 | positive | growth | 25-40 | |
| 30799 | positive | optimum | 33.5 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30799 | positive | growth | 6.5-11 | alkaliphile |
| 30799 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 30799
- oxygen tolerance: aerobe
spore formation
- @ref: 30799
- spore formation: no
halophily
- @ref: 30799
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-5 %
observation
- @ref: 30799
- observation: aggregates in clumps
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30799 | 17234 | glucose | + | carbon source |
| 30799 | 29987 | glutamate | + | carbon source |
| 30799 | 15361 | pyruvate | + | carbon source |
enzymes
- @ref: 30799
- value: catalase
- activity: +
- ec: 1.11.1.6
Isolation, sampling and environmental information
isolation
- @ref: 19359
- sample type: contaminant from an anoxygenic phototrophic culture obtained from a semi-arid tropical soil
- geographic location: Andhra Pradesh
- country: India
- origin.country: IND
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Laboratory | #Contaminant |
| #Environmental | #Terrestrial | #Soil |
| #Condition | #Anoxic (anaerobic) | |
| #Climate | #Hot | #Semiarid |
taxonmaps
- @ref: 69479
- File name: preview.99_17891.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_4121;97_5655;98_7106;99_17891&stattab=map
- Last taxonomy: Planococcaceae
- 16S sequence: FM209428
- Sequence Identity:
- Total samples: 546
- soil counts: 56
- aquatic counts: 124
- animal counts: 360
- plant counts: 6
Safety information
risk assessment
- @ref: 19359
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19359
- description: Chryseomicrobium amylolyticum partial 16S rRNA gene, type strain JC16T
- accession: FM209428
- length: 1477
- database: ena
- NCBI tax ID: 558165
GC content
| @ref | GC-content | method |
|---|---|---|
| 19359 | 57.6 | high performance liquid chromatography (HPLC) |
| 30799 | 57.6 |
External links
@ref: 19359
culture collection no.: DSM 23442, NBRC 105215
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23264507 | Chryseomicrobium amylolyticum sp. nov., isolated from a semi-arid tropical soil, and emended descriptions of the genus Chryseomicrobium and Chryseomicrobium imtechense. | Raj PS, Sasikala C, Ramaprasad EVV, Subhash Y, Busse HJ, Schumann P, Ramana CV | Int J Syst Evol Microbiol | 10.1099/ijs.0.044552-0 | 2012 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, India, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Tropical Climate, Vitamin K 2/analogs & derivatives/analysis | Genetics |
| Phylogeny | 28901904 | Chryseomicrobium deserti sp. nov., isolated from desert soil in South Korea. | Lin P, Yan ZF, Li CT, Kook M, Wang QJ, Yi TH | Int J Syst Evol Microbiol | 10.1099/ijsem.0.002264 | 2017 | Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, *Desert Climate, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Vitamin K 2/chemistry | Transcriptome |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 19359 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23442) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23442 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30799 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27130 | 28776041 | |
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta |