Strain identifier
BacDive ID: 23197
Type strain: 
Species: Bhargavaea ullalensis
Strain Designation: ZMA-19
Strain history: CIP <- 2012, P. Kämpfer, Giessen Univ., Giessen, Germany: strain ZMA-19
NCBI tax ID(s): 1265685 (species)
version 8.1 (current version)
General
@ref: 19358
BacDive-ID: 23197
DSM-Number: 26128
keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive, rod-shaped
description: Bhargavaea ullalensis ZMA-19 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from coastal sand.
NCBI tax id
- NCBI tax id: 1265685
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19358 | <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; ZMA 19 |
| 123713 | CIP <- 2012, P. Kämpfer, Giessen Univ., Giessen, Germany: strain ZMA-19 |
doi: 10.13145/bacdive23197.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Caryophanaceae
- genus: Bhargavaea
- species: Bhargavaea ullalensis
- full scientific name: Bhargavaea ullalensis Glaeser et al. 2013
@ref: 19358
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Planococcaceae
genus: Bhargavaea
species: Bhargavaea ullalensis
full scientific name: Bhargavaea ullalensis Glaeser et al. 2013
strain designation: ZMA-19
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility |
|---|---|---|---|---|---|
| 30812 | positive | 2.5 µm | 0.9 µm | rod-shaped | no |
| 123713 | positive | oval-shaped | no |
pigmentation
- @ref: 30812
- production: yes
Culture and growth conditions
culture medium
| @ref | name | growth | composition | link |
|---|---|---|---|---|
| 40761 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
| 123713 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 30812 | positive | growth | 15-50 | |
| 30812 | positive | optimum | 30 | mesophilic |
| 40761 | positive | growth | 25 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30812 | positive | growth | 5.5-11 | alkaliphile |
| 30812 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
- @ref: 30812
- oxygen tolerance: aerobe
spore formation
- @ref: 30812
- spore formation: no
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30812 | 30089 | acetate | + | carbon source |
| 30812 | 16947 | citrate | + | carbon source |
| 30812 | 29987 | glutamate | + | carbon source |
| 30812 | 24996 | lactate | + | carbon source |
| 30812 | 25115 | malate | + | carbon source |
| 30812 | 15361 | pyruvate | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30812 | catalase | + | 1.11.1.6 |
| 30812 | gelatinase | + | |
| 30812 | cytochrome oxidase | + | 1.9.3.1 |
| 30812 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent | latitude | longitude | isolation date |
|---|---|---|---|---|---|---|---|---|
| 19358 | coastal sand | Karnataka State, Dakshina Kannada, Mangalore City, Ullal coast (12° 47' 38. 4'' N 74° 50' 57.8'' E) | India | IND | Asia | 12.794 | 74.8494 | |
| 123713 | Environment, Soil, coastal sand | Taiwan | TWN | Asia | 2010 |
isolation source categories
- Cat1: #Environmental
- Cat2: #Terrestrial
- Cat3: #Sandy
taxonmaps
- @ref: 69479
- File name: preview.99_7570.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_3;96_2682;97_3294;98_4145;99_7570&stattab=map
- Last taxonomy: Bhargavaea
- 16S sequence: JX144975
- Sequence Identity:
- Total samples: 633
- soil counts: 150
- aquatic counts: 121
- animal counts: 322
- plant counts: 40
Safety information
risk assessment
| @ref | biosafety level | biosafety level comment |
|---|---|---|
| 19358 | 1 | Risk group (German classification) |
| 123713 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 19358
- description: Bhargavaea ullalensis strain ZMA 19 16S ribosomal RNA gene, partial sequence
- accession: JX144975
- length: 1430
- database: ena
- NCBI tax ID: 1265685
Genome sequences
- @ref: 66792
- description: Bhargavaea ullalensis DSM 26128
- accession: 2928332132
- assembly level: draft
- database: img
- NCBI tax ID: 1265685
External links
@ref: 19358
culture collection no.: DSM 26128, CCM 8429, LMG 27071, ZMA 19, CIP 110542
straininfo link
- @ref: 87427
- straininfo: 380983
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23243092 | Bhargavaea ullalensis sp. nov., isolated from coastal sand. | Glaeser SP, Arun AB, Rekha PD, Prabhu S, Busse HJ, Kampfer P | Int J Syst Evol Microbiol | 10.1099/ijs.0.045062-0 | 2012 | Bacillales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Genes, Bacterial, India, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, Polyamines/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Silicon Dioxide, Vitamin K 2/analogs & derivatives/analysis | Genetics |
| Phylogeny | 30151776 | Bhargavaea changchunensis sp. nov. isolated from soil in China. | Tian FH, Fan DY, Zhang C, Jia CW, Gao W, Li Y, Li CT | Arch Microbiol | 10.1007/s00203-018-1563-6 | 2018 | Base Composition, China, DNA, Bacterial/chemistry, Fatty Acids/analysis, Nucleic Acid Hybridization, Phylogeny, Planococcaceae/*classification/genetics/isolation & purification, RNA, Ribosomal, 16S/genetics, *Soil Microbiology | Enzymology |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 19358 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26128) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26128 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30812 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27143 | 28776041 | |
| 40761 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/8412 | ||||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 87427 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID380983.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 123713 | Curators of the CIP | Collection of Institut Pasteur (CIP 110542) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110542 |