Strain identifier
BacDive ID: 23173
Type strain: 
Species: Brevibacillus massiliensis
Strain Designation: phR
Strain history: <- P. Hugon, Timone Hospital, Marseille, France; phR <- P. Hugon, URMITE, CNRS 6236, Marseille, France
NCBI tax ID(s): 1118054 (species)
version 8.1 (current version)
General
@ref: 19355
BacDive-ID: 23173
DSM-Number: 25447
keywords: genome sequence, 16S sequence, Bacteria, spore-forming, mesophilic, motile
description: Brevibacillus massiliensis phR is a spore-forming, mesophilic, motile bacterium that was isolated from fecal flora of a woman suffering from morbid obesity.
NCBI tax id
- NCBI tax id: 1118054
- Matching level: species
strain history
- @ref: 19355
- history: <- P. Hugon, Timone Hospital, Marseille, France; phR <- P. Hugon, URMITE, CNRS 6236, Marseille, France
doi: 10.13145/bacdive23173.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Caryophanales
- family: Paenibacillaceae
- genus: Brevibacillus
- species: Brevibacillus massiliensis
- full scientific name: Brevibacillus massiliensis Hugon et al. 2013
@ref: 19355
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Bacillales
family: Paenibacillaceae
genus: Brevibacillus
species: Brevibacillus massiliensis
full scientific name: Brevibacillus massiliensis Hugon et al. 2013
strain designation: phR
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | yes | 91.569 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
- @ref: 19355
- name: CASO AGAR (MERCK 105458) (DSMZ Medium 220)
- growth: yes
- link: https://mediadive.dsmz.de/medium/220
- composition: Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
culture temp
- @ref: 19355
- growth: positive
- type: growth
- temperature: 30
- range: mesophilic
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | yes | 100 |
| 69480 | yes | 100 |
Isolation, sampling and environmental information
isolation
- @ref: 19355
- sample type: fecal flora of a woman suffering from morbid obesity
- geographic location: Marseille
- country: France
- origin.country: FRA
- continent: Europe
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Infection | #Patient | |
| #Host Body Product | #Gastrointestinal tract | #Feces (Stool) |
| #Host | #Human | #Female |
Safety information
risk assessment
- @ref: 19355
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19355
- description: Brevibacillus massiliensis strain phR 16S ribosomal RNA gene, partial sequence
- accession: JN837488
- length: 1477
- database: ena
- NCBI tax ID: 1118054
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Brevibacillus massiliensis phR | GCA_000311785 | scaffold | ncbi | 1118054 |
| 66792 | Brevibacillus massiliensis phR | 2547132151 | draft | img | 1118054 |
GC content
- @ref: 19355
- GC-content: 53.1
- method: sequence analysis
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | yes | 100 | no |
| motile | yes | 86.79 | no |
| flagellated | no | 50 | no |
| gram-positive | yes | 77.471 | no |
| anaerobic | no | 96.161 | no |
| aerobic | yes | 68.779 | no |
| halophile | no | 92.512 | no |
| spore-forming | yes | 95.989 | no |
| glucose-util | yes | 83.331 | no |
| thermophile | no | 89.433 | yes |
| glucose-ferment | no | 92.686 | no |
External links
@ref: 19355
culture collection no.: DSM 25447, CSUR P177
straininfo link
- @ref: 87406
- straininfo: 398258
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19355 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25447) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25447 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 87406 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID398258.1 | StrainInfo: A central database for resolving microbial strain identifiers |