Archive BacDiveID:10.13145/bacdive23169.20230509.8.1

Strain identifier

BacDive ID: 23169

Type strain:

Species: Duganella zoogloeoides

Strain Designation: OSU 115, 115

Strain history: IAM 12670 <-- ATCC 25935 <-- P. R. Dugan OSU 115 (Zoogloea ramigera).

NCBI tax ID(s): 1261617 (strain), 75659 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.

General

@ref: 18814

BacDive-ID: 23169

DSM-Number: 16928

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile

description: Duganella zoogloeoides OSU 115 is an aerobe, mesophilic, motile bacterium that was isolated from Trickling filter.

NCBI tax id

NCBI tax id	Matching level
1261617	strain
75659	species

strain history

@ref	history
18814	<- IAM <- ATCC <- P. R. Dugan; 115 (as a strain of Zoogloea ramigera)
67770	IAM 12670 <-- ATCC 25935 <-- P. R. Dugan OSU 115 (Zoogloea ramigera).

doi: 10.13145/bacdive23169.20230509.8.1

Name and taxonomic classification

LPSN

@ref: 20215
description: domain/bacteria
keyword: phylum/pseudomonadota
domain: Bacteria
phylum: Pseudomonadota
class: Betaproteobacteria
order: Burkholderiales
family: Oxalobacteraceae
genus: Duganella
species: Duganella zoogloeoides
full scientific name: Duganella zoogloeoides Hiraishi et al. 1997

@ref: 18814

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Oxalobacteraceae

genus: Duganella

species: Duganella zoogloeoides

full scientific name: Duganella zoogloeoides Hiraishi et al. 1997

strain designation: OSU 115, 115

type strain: yes

Morphology

cell morphology

@ref	motility	confidence	gram stain
69480	yes	99.107
69480		99.998	negative

colony morphology

@ref: 60667
incubation period: 2 days

Culture and growth conditions

culture medium

@ref	name	growth	link	composition
18814	BHI MEDIUM (DSMZ Medium 215)	yes	https://mediadive.dsmz.de/medium/215	Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water
18814	NUTRIENT AGAR (DSMZ Medium 1)	yes	https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium1.pdf

culture temp

@ref	growth	type	temperature	range
18814	positive	growth	30	mesophilic
60667	positive	growth	30	mesophilic
67770	positive	growth	25	mesophilic

Physiology and metabolism

oxygen tolerance

@ref: 60667
oxygen tolerance: aerobe

spore formation

@ref	spore formation	confidence
69481	no	100
69480	no	99.989

Isolation, sampling and environmental information

isolation

@ref	sample type	country	origin.country	continent	sampling date
18814	Trickling filter	USA	USA	North America
60667	Trickling filter				1964-01-01
67770	Zoogloeal mass on limestone

isolation source categories

Cat1: #Engineered
Cat2: #Industrial
Cat3: #Engineered product

taxonmaps

@ref: 69479
File name: preview.99_7363.png
url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_429;97_1521;98_1852;99_7363&stattab=map
Last taxonomy: Duganella
16S sequence: D14256
Sequence Identity:
Total samples: 18206
soil counts: 5243
aquatic counts: 3834
animal counts: 4287
plant counts: 4842

Safety information

risk assessment

@ref: 18814
biosafety level: 1
biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@ref: 18814
description: Duganella zoogloeoides gene for 16S rRNA
accession: D14256
length: 1451
database: ena
NCBI tax ID: 75659

Genome sequences

@ref	description	accession	assembly level	database	NCBI tax ID
66792	Duganella zoogloeoides ATCC 25935	1261617.3	wgs	patric	1261617
66792	Duganella zoogloeoides ATCC 25935	2518645587	draft	img	1261617
67770	Duganella zoogloeoides ATCC 25935	GCA_000383895	scaffold	ncbi	1261617

Genome-based predictions

predictions

trait	prediction	confidence	training_data
spore-forming	no	100	no
motile	yes	89.206	no
gram-positive	no	98.678	no
anaerobic	no	98.709	yes
aerobic	yes	89.689	yes
halophile	no	93.324	no
spore-forming	no	93.693	no
thermophile	no	99.552	no
glucose-util	yes	92.244	no
flagellated	yes	79.295	no
glucose-ferment	no	90.589	no

External links

@ref: 18814

culture collection no.: DSM 16928, ATCC 25935, IAM 12670, CCUG 55606, JCM 20729, NCIMB 11941, KCTC 2582, NBRC 102465

straininfo link

@ref: 87402
straininfo: 38724

literature

topic	Pubmed-ID	title	authors	journal	DOI	year	mesh	topic2
Phylogeny	9336937	Proposal to reclassify Zoogloea ramigera IAM 12670 (P. R. Dugan 115) as Duganella zoogloeoides gen. nov., sp. nov.	Hiraishi A, Shin YK, Sugiyama J	Int J Syst Bacteriol	10.1099/00207713-47-4-1249	1997	Culture Media, DNA, Bacterial/analysis, Phylogeny, RNA, Ribosomal, 16S/analysis, Random Amplified Polymorphic DNA Technique, Zoogloea/classification/genetics/physiology	Cultivation
Phylogeny	22169565	Duganella phyllosphaerae sp. nov., isolated from the leaf surface of Trifolium repens and proposal to reclassify Duganella violaceinigra into a novel genus as Pseudoduganella violceinigra gen. nov., comb. nov.	Kampfer P, Wellner S, Lohse K, Martin K, Lodders N	Syst Appl Microbiol	10.1016/j.syapm.2011.10.003	2011	Bacterial Typing Techniques, Carbon/metabolism, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Germany, Molecular Sequence Data, Nucleic Acid Hybridization, Oxalobacteraceae/chemistry/classification/genetics/isolation & purification, Phospholipids/analysis, Phylogeny, Plant Leaves/microbiology, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Trifolium/microbiology	Genetics
Phylogeny	26449233	Duganella ginsengisoli sp. nov., isolated from ginseng soil.	Zhang J, Kim YJ, Hoang VA, Lan Nguyen N, Wang C, Kang JP, Wang D, Yang DC	Int J Syst Evol Microbiol	10.1099/ijsem.0.000669	2015	Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Oxalobacteraceae/classification/genetics/isolation & purification, Panax/microbiology, Phosphatidylethanolamines/chemistry, Phosphatidylglycerols/chemistry, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Soil Microbiology, Ubiquinone/chemistry	Genetics
Phylogeny	28901899	Massilia glaciei sp. nov., isolated from the Muztagh Glacier.	Gu Z, Liu Y, Xu B, Wang N, Jiao N, Shen L, Liu H, Zhou Y, Liu X, Li J, Sun J	Int J Syst Evol Microbiol	10.1099/ijsem.0.002252	2017	Bacterial Typing Techniques, Base Composition, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Ice Cover/microbiology, Nucleic Acid Hybridization, Oxalobacteraceae/classification/genetics/isolation & purification, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/chemistry	Transcriptome

Reference

@id	authors	catalogue	doi/url	title
18814	Curators of the DSMZ	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16928)	https://www.dsmz.de/collection/catalogue/details/culture/DSM-16928
20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.		10.1099/ijsem.0.004332	List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
60667	Curators of the CCUG	Culture Collection University of Gothenburg (CCUG) (CCUG 55606)	https://www.ccug.se/strain?id=55606
66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770	Curators of the JCM		https://jcm.brc.riken.jp/en/
69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.		https://microbeatlas.org/	MicrobeAtlas 1.0 beta
69480	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann		https://diaspora-project.de/progress.html#genomes	Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481	Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch		10.21203/rs.3.rs-2527258/v1	Predictions based on the model GenomeNet Sporulation v. 1
87402	Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.		10.60712/SI-ID38724.1	StrainInfo: A central database for resolving microbial strain identifiers