Strain identifier

BacDive ID: 23162

Type strain: Yes

Species: Aeromicrobium massiliense

Strain Designation: JC14

Strain history: DSM 25782 <-- J.-C. Lagier; Fac. Med., Aix-Marseille Univ., France; JC14.

NCBI tax ID(s): 1464554 (species)

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General

@ref: 19271

BacDive-ID: 23162

DSM-Number: 25782

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Aeromicrobium massiliense JC14 is a mesophilic bacterium that was isolated from human feces from a healthy 16-year-old male volunteer patient.

NCBI tax id

  • NCBI tax id: 1464554
  • Matching level: species

strain history

@refhistory
19271<- J.-C. Lagier, Timone Hospital, Marseille, France; JC14 <- J.-C. Lagier, URMITE, 27 bd Jean Moulin, 13385 Marseille Cedex 05, France
67770DSM 25782 <-- J.-C. Lagier; Fac. Med., Aix-Marseille Univ., France; JC14.

doi: 10.13145/bacdive23162.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Propionibacteriales
  • family: Nocardioidaceae
  • genus: Aeromicrobium
  • species: Aeromicrobium massiliense
  • full scientific name: Aeromicrobium massiliense Ramasamy et al. 2014

@ref: 19271

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Nocardioidaceae

genus: Aeromicrobium

species: Aeromicrobium massiliense

full scientific name: Aeromicrobium massiliense Ramasamy et al. 2014

strain designation: JC14

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlink
19271TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf
19271CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium220.pdf

culture temp

@refgrowthtypetemperaturerange
67770positivegrowth28mesophilic
19271positivegrowth28mesophilic

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
19271human feces from a healthy 16-year-old male volunteer patientSenegalSENAfrica
67770Stool of a healthy Senegalese patient

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host#Human#Male
#Host Body Product#Gastrointestinal tract#Feces (Stool)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3072.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_142;96_1606;97_1920;98_2361;99_3072&stattab=map
  • Last taxonomy: Aeromicrobium massiliense subclade
  • 16S sequence: JF824798
  • Sequence Identity:
  • Total samples: 332
  • soil counts: 140
  • aquatic counts: 16
  • animal counts: 64
  • plant counts: 112

Safety information

risk assessment

  • @ref: 19271
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 19271
  • description: Aeromicrobium massiliense JC14 16S ribosomal RNA gene, partial sequence
  • accession: JF824798
  • length: 1468
  • database: ena
  • NCBI tax ID: 1033730

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aeromicrobium massiliense JC141033730.6wgspatric1033730
66792Aeromicrobium massiliense JC142636416159draftimg1033730
67770Aeromicrobium massiliense JC14 type strain:LMG 18890GCA_000285435contigncbi1033730
67770Aeromicrobium massiliense JC14GCA_000312105scaffoldncbi1033730

GC content

@refGC-contentmethod
1927177.32sequence analysis
6777072.49genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno54.709no
flagellatedno92.276no
gram-positiveyes91.067no
anaerobicno97.215no
aerobicyes91.355no
halophileno90.561no
spore-formingno82.675no
thermophileno98.293yes
glucose-utilyes86.767no
glucose-fermentno86.091no

External links

@ref: 19271

culture collection no.: DSM 25782, CSUR P158, JCM 30543

straininfo link

  • @ref: 87396
  • straininfo: 405269

Reference

@idauthorscataloguedoi/urltitle
19271Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25782)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25782
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
87396Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID405269.1StrainInfo: A central database for resolving microbial strain identifiers