Strain identifier

BacDive ID: 23155

Type strain: Yes

Species: Gordonia caeni

Strain Designation: MJ32, N2-9

Strain history: M. K. Kim MJ32.

NCBI tax ID(s): 1007097 (species)

« back to strain detail view
For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 19187

BacDive-ID: 23155

DSM-Number: 45852

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, rod-shaped

description: Gordonia caeni MJ32 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from sludge sample of the Daejeon sewage disposal plant.

NCBI tax id

  • NCBI tax id: 1007097
  • Matching level: species

strain history

@refhistory
19187<- KCTC; KCTC 19771 <- M. K. Kim; MJ32
67770M. K. Kim MJ32.

doi: 10.13145/bacdive23155.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Gordoniaceae
  • genus: Gordonia
  • species: Gordonia caeni
  • full scientific name: Gordonia caeni Srinivasan et al. 2012

@ref: 19187

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Gordoniaceae

genus: Gordonia

species: Gordonia caeni

full scientific name: Gordonia caeni Srinivasan et al. 2012

strain designation: MJ32, N2-9

type strain: yes

Morphology

cell morphology

  • @ref: 30128
  • gram stain: positive
  • cell length: 0.65 µm
  • cell width: 0.25 µm
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 30128
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 19187
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
19187positivegrowth28mesophilic
30128positivegrowth20-42
30128positiveoptimum30mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30128positivegrowth6-9.5alkaliphile
30128positiveoptimum7.25

Physiology and metabolism

oxygen tolerance

  • @ref: 30128
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30128
  • spore formation: no

halophily

  • @ref: 30128
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-4 %

observation

  • @ref: 67770
  • observation: quinones: MK-9(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3012817128adipate+carbon source
3012816449alanine+carbon source
3012822599arabinose+carbon source
3012816947citrate+carbon source
3012833984fucose+carbon source
3012824265gluconate+carbon source
3012817234glucose+carbon source
3012828087glycogen+carbon source
3012825115malate+carbon source
3012817306maltose+carbon source
3012829864mannitol+carbon source
3012828053melibiose+carbon source
3012817268myo-inositol+carbon source
30128506227N-acetylglucosamine+carbon source
3012826546rhamnose+carbon source
3012833942ribose+carbon source
3012817814salicin+carbon source
3012830911sorbitol+carbon source
3012817992sucrose+carbon source

enzymes

@refvalueactivityec
30128acid phosphatase+3.1.3.2
30128alkaline phosphatase+3.1.3.1
30128catalase+1.11.1.6
30128cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
19187sludge sample of the Daejeon sewage disposal plantRepublic of KoreaKORAsia
67770Sludge at the Daejeon sewage disposal plantRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Waste#Water treatment plant
#Environmental#Terrestrial#Mud (Sludge)

Safety information

risk assessment

  • @ref: 19187
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 19187
  • description: Gordonia caeni strain MJ32 16S ribosomal RNA gene, partial sequence
  • accession: JF806526
  • length: 1433
  • database: ena
  • NCBI tax ID: 1007097

GC content

@refGC-contentmethod
1918769.2high performance liquid chromatography (HPLC)
3012869.2

External links

@ref: 19187

culture collection no.: DSM 45852, JCM 16923, KCTC 19771

straininfo link

  • @ref: 87389
  • straininfo: 404793

literature

  • topic: Phylogeny
  • Pubmed-ID: 22228669
  • title: Gordonia caeni sp. nov., isolated from sludge of a sewage disposal plant.
  • authors: Srinivasan S, Park G, Yang H, Hwang S, Bae Y, Jung YA, Kim MK, Lee M
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.029736-0
  • year: 2012
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Gordonia Bacterium/*classification/genetics/isolation & purification, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Sewage/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
19187Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45852)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45852
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30128Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2648128776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
87389Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID404793.1StrainInfo: A central database for resolving microbial strain identifiers