Strain identifier
BacDive ID: 23132
Type strain: 
Species: Mycobacterium hippocampi
Strain Designation: BFLP-6
Strain history: LMG 25372 <-- J. L. Balcázar; Sci. & Technol. Park of Univ. of Girona, Spain; BFLP-6.
NCBI tax ID(s): 659824 (species)
version 8.1 (current version)
General
@ref: 18868
BacDive-ID: 23132
DSM-Number: 45391
keywords: genome sequence, 16S sequence, Bacteria, mesophilic, animal pathogen
description: Mycobacterium hippocampi BFLP-6 is a mesophilic animal pathogen that was isolated from captive seahorse with tail rot from a aquarium.
NCBI tax id
- NCBI tax id: 659824
- Matching level: species
strain history
| @ref | history |
|---|---|
| 18868 | <- J. L. Balcázar,Inst. of Marine Search, Vigo;BFLP-6 |
| 67770 | LMG 25372 <-- J. L. Balcázar; Sci. & Technol. Park of Univ. of Girona, Spain; BFLP-6. |
doi: 10.13145/bacdive23132.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Mycobacteriaceae
- genus: Mycobacterium
- species: Mycobacterium hippocampi
- full scientific name: Mycobacterium hippocampi Balcázar et al. 2014
synonyms
- @ref: 20215
- synonym: Mycolicibacterium hippocampi
@ref: 18868
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Mycobacteriaceae
genus: Mycobacterium
species: Mycobacterium hippocampi
full scientific name: Mycobacterium hippocampi Balcázar et al. 2014
strain designation: BFLP-6
type strain: yes
Morphology
cell morphology
| @ref | motility | confidence | gram stain |
|---|---|---|---|
| 69480 | no | 91.295 | |
| 69480 | 100 | positive |
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 18868 | MIDDLEBROOK MEDIUM (DSMZ Medium 645) | yes | https://mediadive.dsmz.de/medium/645 | Name: MIDDLEBROOK MEDIUM (DSMZ Medium 645) Composition: Bacto Middlebrook 7H10 agar 20.9945 g/l Glycerol Distilled water |
| 18868 | BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) | yes | https://mediadive.dsmz.de/medium/514 | Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 18868 | positive | growth | 28 | mesophilic |
| 67770 | positive | growth | 25 | mesophilic |
Physiology and metabolism
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 69481 | no | 97 |
| 69480 | no | 99.355 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|---|
| 18868 | captive seahorse (Hippocampus guttulatus) with tail rot from a aquarium | Hippocampus guttulatus | Galicia, Vigo, Institute of Marine Research | Spain | ESP | Europe |
| 67770 | Seahorse (Hippocampus guttulatus) with tail rot | Hippocampus guttulatus |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Built environment | #Water reservoir (Aquarium/pool) |
| #Environmental | #Aquatic | #Marine |
| #Host | #Fishes |
Safety information
risk assessment
- @ref: 18868
- pathogenicity animal: yes
- biosafety level: 2
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 18868
- description: Mycobacterium hippocampi partial 16S rRNA gene, type strain BFLP-6T
- accession: FN430736
- length: 1473
- database: ena
- NCBI tax ID: 659824
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Mycolicibacterium hippocampi JCM 30996 | GCA_010723735 | contig | ncbi | 659824 |
| 66792 | Mycolicibacterium hippocampi strain JCM 30996 | 659824.8 | wgs | patric | 659824 |
| 66792 | Mycolicibacterium hippocampi JCM 30996 | 2902850712 | draft | img | 659824 |
| 66792 | Mycolicibacterium hippocampi DSM 45391 | GCA_025821585 | contig | ncbi | 659824 |
GC content
- @ref: 18868
- GC-content: 66.7
- method: thermal denaturation, midpoint method (Tm)
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 97 | no |
| gram-positive | yes | 91.326 | no |
| anaerobic | no | 99.566 | no |
| halophile | no | 87.867 | no |
| spore-forming | no | 83.814 | no |
| glucose-util | yes | 86.635 | no |
| thermophile | no | 99.336 | yes |
| flagellated | no | 98.197 | no |
| motile | no | 93.327 | no |
| aerobic | yes | 91.782 | no |
| glucose-ferment | no | 91.302 | no |
External links
@ref: 18868
culture collection no.: DSM 45391, LMG 25372, JCM 30996
straininfo link
- @ref: 87367
- straininfo: 363694
literature
- topic: Phylogeny
- Pubmed-ID: 24801334
- title: Mycobacterium hippocampi sp. nov., a rapidly growing scotochromogenic species isolated from a seahorse with tail rot.
- authors: Balcazar JL, Planas M, Pintado J
- journal: Curr Microbiol
- DOI: 10.1007/s00284-014-0588-6
- year: 2014
- mesh: Animals, Bacterial Proteins/genetics, Bacterial Typing Techniques, Base Composition, Cluster Analysis, Cytosol/chemistry, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases, Fatty Acids/analysis, Hydrogen-Ion Concentration, Microscopy, Electron, Scanning, Molecular Sequence Data, Mycobacterium Infections/microbiology, Mycolic Acids/analysis, Nontuberculous Mycobacteria/*classification/genetics/*isolation & purification/physiology, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Smegmamorpha/*microbiology, Sodium Chloride/metabolism, Tail/microbiology, Temperature
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 18868 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45391) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45391 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
| 87367 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID363694.1 | StrainInfo: A central database for resolving microbial strain identifiers |