Strain identifier
BacDive ID: 23083
Type strain: 
Species: Methanothrix soehngenii
Strain Designation: GP6
Strain history: DSM 3671 <-- G. B. Patel GP6.
NCBI tax ID(s): 990316 (strain), 2223 (species)
version 9.1 (current version)
General
@ref: 18852
BacDive-ID: 23083
DSM-Number: 3671
keywords: genome sequence, 16S sequence, Archaea, anaerobe, Gram-negative
description: Methanothrix soehngenii GP6 is an anaerobe, Gram-negative archaeon that was isolated from acetic acid enrichment from pear waste digester inoculated with sewage sludge.
NCBI tax id
| NCBI tax id | Matching level |
|---|---|
| 990316 | strain |
| 2223 | species |
strain history
| @ref | history |
|---|---|
| 18852 | <- G. B. Patel, National Research Council, Ottawa, Canada; GP6 (Methanosaeta concilii) <- G. B. Patel {1983} |
| 67770 | DSM 3671 <-- G. B. Patel GP6. |
doi: 10.13145/bacdive23083.20240916.9.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/archaea
- keyword: phylum/methanobacteriota
- domain: Archaea
- phylum: Methanobacteriota
- class: Methanomicrobia
- order: Methanosarcinales
- family: Methanotrichaceae
- genus: Methanothrix
- species: Methanothrix soehngenii
- full scientific name: Methanothrix soehngenii Huser et al. 1983
synonyms
@ref synonym 20215 Methanosaeta concilii 20215 Methanothrix concilii
@ref: 18852
domain: Archaea
phylum: Euryarchaeota
class: Methanomicrobia
order: Methanosarcinales
family: Methanosaetaceae
genus: Methanothrix
species: Methanothrix soehngenii
full scientific name: Methanothrix soehngenii Huser et al. 1983
strain designation: GP6
type strain: no
Morphology
colony morphology
- @ref: 18852
- incubation period: >14 days
multimedia
- @ref: 18852
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_3671.jpg
- caption: Medium 334a, 35°C
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture temp
- @ref: 67770
- growth: positive
- type: growth
- temperature: 37
Physiology and metabolism
oxygen tolerance
- @ref: 18852
- oxygen tolerance: anaerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 18852 | acetic acid enrichment from pear waste digester inoculated with sewage sludge | Ottawa | Canada | CAN | North America |
| 67770 | Sewage sludge | Ottawa | Canada | CAN | North America |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Waste | #Sewage sludge |
| #Host | #Plants | #Decomposing plant |
| #Condition | #Acidic |
Safety information
risk assessment
- @ref: 18852
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
| @ref | description | accession | length | database | NCBI tax ID |
|---|---|---|---|---|---|
| 20218 | Methanosaeta concilii gene for 16S rRNA, partial sequence, strain: NBRC 103675 | AB679168 | 1407 | nuccore | 2223 |
| 20218 | Methanothrix soehngenii 16S (16S rRNA), complete sequence | AH003992 | 159 | nuccore | 2223 |
Genome sequences
- @ref: 66792
- description: Methanothrix soehngenii GP6
- accession: GCA_000204415
- assembly level: complete
- database: ncbi
- NCBI tax ID: 990316
GC content
| @ref | GC-content | method |
|---|---|---|
| 18852 | 61.0 | |
| 18852 | 50.2 | |
| 67770 | 61 | fluorimetric |
Genome-based predictions
predictions
| @ref | trait | model | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 69480 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 68.958 | no |
| 69480 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | yes | 89.247 | yes |
| 69480 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | no | 89.613 | yes |
| 69480 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 87.206 | no |
| 69480 | thermophilic | thermophile | Ability to grow at temperatures above or equal to 45°C | no | 80.384 | yes |
| 69480 | flagellated | motile2+ | Ability to perform flagellated movement | no | 88.75 | no |
External links
@ref: 18852
culture collection no.: DSM 3671, JCM 10134, NBRC 103675, OCM 69, ATCC 35969, NRC 2989
straininfo link
- @ref: 87321
- straininfo: 47744
literature
- topic: Phylogeny
- Pubmed-ID: 16403877
- title: Methanosaeta harundinacea sp. nov., a novel acetate-scavenging methanogen isolated from a UASB reactor.
- authors: Ma K, Liu X, Dong X
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.63887-0
- year: 2006
- mesh: Acetates/metabolism, Anaerobiosis, Base Composition, Beer, *Bioreactors, China, Culture Media, DNA Restriction Enzymes/genetics, Hydrogen-Ion Concentration, Methane/metabolism, Methanosarcinaceae/chemistry/*classification/isolation & purification/physiology, Molecular Sequence Data, Oxidoreductases/genetics/metabolism, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Homology, Nucleic Acid, Sewage/*microbiology, Species Specificity
- topic2: Metabolism
Reference
| @id | authors | catalogue | doi/url | title | journal | pubmed |
|---|---|---|---|---|---|---|
| 18852 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3671) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3671 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 87321 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID47744.1 | StrainInfo: A central database for resolving microbial strain identifiers |