Strain identifier
BacDive ID: 23076
Type strain: 
Species: Leptospira idonii
Strain Designation: Eri-1
Strain history: M. Saito strain Eri-1.
NCBI tax ID(s): 1193500 (species)
version 8.1 (current version)
General
@ref: 19378
BacDive-ID: 23076
DSM-Number: 26084
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Leptospira idonii Eri-1 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from environmental water beside a swimming pool.
NCBI tax id
- NCBI tax id: 1193500
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19378 | <- M. Saito, Kyushu Univ., Fac. of Med. Scs., Fukuoka, Japan; Eri-1 <- E. Kohno |
| 67770 | M. Saito strain Eri-1. |
doi: 10.13145/bacdive23076.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/spirochaetota
- domain: Bacteria
- phylum: Spirochaetota
- class: Spirochaetia
- order: Leptospirales
- family: Leptospiraceae
- genus: Leptospira
- species: Leptospira idonii
- full scientific name: Leptospira idonii Saito et al. 2013
@ref: 19378
domain: Bacteria
phylum: Spirochaetes
class: Spirochaetia
order: Spirochaetales
family: Leptospiraceae
genus: Leptospira
species: Leptospira idonii
full scientific name: Leptospira idonii Saito et al. 2013
strain designation: Eri-1
type strain: yes
Morphology
cell morphology
- @ref: 30908
- gram stain: negative
- cell length: 10.6 µm
- cell width: 0.2 µm
- cell shape: rod-shaped
- motility: yes
colony morphology
- @ref: 19378
- incubation period: 8-14 days
Culture and growth conditions
culture medium
- @ref: 19378
- name: LEPTOSPIRA-MEDIUM (DSMZ Medium 1113)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1113
- composition: Name: LEPTOSPIRA-MEDIUM (DSMZ Medium 1113) Composition: Leptospira Medium Base EMJH 2.3 g/l Agarose 1.5 g/l Leptospira Enrichment EMJH Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19378 | positive | growth | 37 | mesophilic |
| 67770 | positive | growth | 30 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 30908
- oxygen tolerance: aerobe
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 19378 | environmental water beside a swimming pool | Fukuoka, Hakozaki campus of Kyushu University | Japan | JPN | Asia |
| 67770 | Environmental water sample on the campus of Kyushu University | Fukuoka | Japan | JPN | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Built environment | #Water reservoir (Aquarium/pool) |
| #Environmental | #Aquatic |
taxonmaps
- @ref: 69479
- File name: preview.99_115448.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15829;96_1660;97_1987;98_78052;99_115448&stattab=map
- Last taxonomy: Leptospira idonii
- 16S sequence: AB721966
- Sequence Identity:
- Total samples: 3273
- soil counts: 218
- aquatic counts: 2841
- animal counts: 126
- plant counts: 88
Safety information
risk assessment
- @ref: 19378
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19378
- description: Leptospira idonii gene for 16S rRNA, partial sequence
- accession: AB721966
- length: 1443
- database: ena
- NCBI tax ID: 1193500
GC content
| @ref | GC-content | method |
|---|---|---|
| 19378 | 42.5 | high performance liquid chromatography (HPLC) |
| 30908 | 42.5 |
External links
@ref: 19378
culture collection no.: DSM 26084, JCM 18486
straininfo link
- @ref: 87314
- straininfo: 401461
literature
- topic: Phylogeny
- Pubmed-ID: 23203626
- title: Leptospira idonii sp. nov., isolated from environmental water.
- authors: Saito M, Villanueva SYAM, Kawamura Y, Iida KI, Tomida J, Kanemaru T, Kohno E, Miyahara S, Umeda A, Amako K, Gloriani NG, Yoshida SI
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.047233-0
- year: 2012
- mesh: Animals, Azaguanine, Bacterial Typing Techniques, Base Composition, Cricetinae, DNA, Bacterial/genetics, Japan, Leptospira/*classification/genetics/isolation & purification, Male, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Water Microbiology
- topic2: Genetics
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 19378 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26084) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26084 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30908 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27238 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 87314 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID401461.1 | StrainInfo: A central database for resolving microbial strain identifiers |