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Strain identifier

BacDive ID: 23074

Type strain: Yes

Species: Companilactobacillus kimchiensis

Strain Designation: L133

Strain history: J.-W. Bae 133.

NCBI tax ID(s): 993692 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 19296

BacDive-ID: 23074

DSM-Number: 24716

keywords: Gram-positive, mesophilic, microaerophile, Bacteria, 16S sequence, genome sequence, rod-shaped

description: Companilactobacillus kimchiensis L133 is a microaerophile, mesophilic, Gram-positive bacterium that was isolated from kimchi, fermented Korean food.

NCBI tax id

  • NCBI tax id: 993692
  • Matching level: species

strain history

doi: 10.13145/bacdive23074.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Lactobacillaceae
  • genus: Companilactobacillus
  • species: Companilactobacillus kimchiensis
  • full scientific name: Companilactobacillus kimchiensis (Kim et al. 2013) Zheng et al. 2020
  • synonyms

    • @ref: 20215
    • synonym: Lactobacillus kimchiensis

@ref: 19296

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Lactobacillaceae

genus: Companilactobacillus

species: Companilactobacillus kimchiensis

full scientific name: Companilactobacillus kimchiensis (Kim et al. 2013) Zheng et al. 2020

strain designation: L133

type strain: yes

Morphology

cell morphology

  • @ref: 30505
  • gram stain: positive
  • cell length: 3 µm
  • cell shape: rod-shaped

Culture and growth conditions

culture medium

  • @ref: 19296
  • name: MRS MEDIUM (DSMZ Medium 11)
  • growth: yes
  • link: https://bacmedia.dsmz.de/medium/11
  • composition: Name: MRS MEDIUM (DSMZ Medium 11) Composition: Glucose 20.0 g/l Casein peptone 10.0 g/l Meat extract 10.0 g/l Na-acetate 5.0 g/l Yeast extract 5.0 g/l (NH4)3 citrate 2.0 g/l K2HPO4 2.0 g/l Tween 80 1.0 g/l MgSO4 x 7 H2O 0.2 g/l MnSO4 x H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
19296positivegrowth25mesophilic
30505positivegrowth15-37
30505positiveoptimum25mesophilic
67770positivegrowth25mesophilic

culture pH

@refabilitytypepH
30505positivegrowth05-09
30505positiveoptimum7.5

Physiology and metabolism

oxygen tolerance

  • @ref: 19296
  • oxygen tolerance: microaerophile

halophily

@refsaltgrowthtested relationconcentration
30505NaClpositivegrowth0-5 %
30505NaClpositiveoptimum1.5 %

murein

  • @ref: 19296
  • murein short key: A11.31
  • type: A4alpha L-Lys-D-Asp

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3050517057cellobiose+carbon source
3050528757fructose+carbon source
3050528260galactose+carbon source
3050517234glucose+carbon source
3050517716lactose+carbon source
3050517306maltose+carbon source
3050537684mannose+carbon source
30505506227N-acetylglucosamine+carbon source
3050517814salicin+carbon source
3050517992sucrose+carbon source
3050527082trehalose+carbon source
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
6837124265gluconate-builds acid from
6837118403L-arabitol-builds acid from
6837118333D-arabitol-builds acid from
6837118287L-fucose-builds acid from
6837128847D-fucose-builds acid from
6837116443D-tagatose+builds acid from
6837162318D-lyxose-builds acid from
6837132528turanose+builds acid from
6837128066gentiobiose+builds acid from
6837117151xylitol-builds acid from
6837128087glycogen-builds acid from
6837128017starch-builds acid from
6837116634raffinose-builds acid from
683716731melezitose-builds acid from
6837115443inulin-builds acid from
6837127082trehalose+builds acid from
6837117992sucrose+builds acid from
6837128053melibiose-builds acid from
6837117716lactose+builds acid from
6837117306maltose+builds acid from
6837117057cellobiose+builds acid from
6837117814salicin-builds acid from
683714853esculin+builds acid from
6837118305arbutin-builds acid from
6837127613amygdalin+builds acid from
6837159640N-acetylglucosamine+builds acid from
68371320061methyl alpha-D-glucopyranoside-builds acid from
6837143943methyl alpha-D-mannoside-builds acid from
6837117924D-sorbitol-builds acid from
6837116899D-mannitol-builds acid from
6837117268myo-inositol-builds acid from
6837116813galactitol-builds acid from
6837162345L-rhamnose-builds acid from
6837117266L-sorbose-builds acid from
6837116024D-mannose+builds acid from
6837115824D-fructose+builds acid from
6837117634D-glucose+builds acid from
6837112936D-galactose+builds acid from
6837174863methyl beta-D-xylopyranoside-builds acid from
6837115963ribitol-builds acid from
6837165328L-xylose-builds acid from
6837165327D-xylose-builds acid from
6837116988D-ribose-builds acid from
6837130849L-arabinose-builds acid from
6837117108D-arabinose-builds acid from
6837117113erythritol-builds acid from
6837117754glycerol-builds acid from

API 50CHac

@refQGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
19296----------++++--------++-+-+++-++------++-+-------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
19296kimchi, fermented Korean foodRepublic of KoreaKORAsia
67770Kimchi (traditional fermented food)Republic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Vegetable (incl. Grains)
#Engineered#Food production#Fermented

Safety information

risk assessment

  • @ref: 19296
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
19296Lactobacillus kimchiensis strain L133 16S ribosomal RNA gene, partial sequenceHQ9065001436ena993692
67770Lactobacillus kimchiensis JCM 17702 gene for 16S rRNA, partial sequenceLC5199961498ena993692

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Companilactobacillus kimchiensis DSM 24716GCA_001438805contigncbi993692
66792Lactobacillus kimchiensis strain DSM 24716993692.3wgspatric993692
66792Companilactobacillus kimchiensis DSM 247162663763333draftimg993692
67770Companilactobacillus kimchiensis strain DSM 24716, whole genome shotgun sequencing projectJQCF00000000ncbi993692

GC content

@refGC-contentmethod
1929635.7fluorimetric
3050535.7
6777035.7thermal denaturation, midpoint method (Tm)
6777035.5genome sequence analysis

External links

@ref: 19296

culture collection no.: DSM 24716, JCM 17702, KACC 15533

straininfo link

@refpassport
20218http://www.straininfo.net/strains/885636
20218http://www.straininfo.net/strains/885637
20218http://www.straininfo.net/strains/885638

literature

  • topic: Phylogeny
  • Pubmed-ID: 22798657
  • title: Lactobacillus kimchiensis sp. nov., isolated from a fermented food.
  • authors: Kim J, Kim JY, Kim MS, Roh SW, Bae JW
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.037572-0
  • year: 2012
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Fermentation, *Food Microbiology, Lactobacillus/*classification/genetics/isolation & purification, Molecular Sequence Data, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA
  • topic2: Biotechnology

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
19296Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24716)https://www.dsmz.de/collection/catalogue/details/culture/DSM-24716
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2683710.1099/ijs.0.037572-022798657
30505Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604126837
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68371Automatically annotated from API 50CH acid