Strain identifier

BacDive ID: 23012

Type strain: Yes

Species: Gibbsiella dentisursi

Strain history: M. Hirasawa NUM 1720.

NCBI tax ID(s): 796890 (species)

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General

@ref: 19207

BacDive-ID: 23012

DSM-Number: 23818

keywords: 16S sequence, Bacteria, mesophilic

description: Gibbsiella dentisursi DSM 23818 is a mesophilic bacterium that was isolated from oral cavity of a bear.

NCBI tax id

  • NCBI tax id: 796890
  • Matching level: species

strain history

@refhistory
19207<- H. Masatomo, Nihon Univ., School of Dentistry, Matsudo, Japan; NUM 1720
67770M. Hirasawa NUM 1720.

doi: 10.13145/bacdive23012.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Gibbsiella
  • species: Gibbsiella dentisursi
  • full scientific name: Gibbsiella dentisursi Saito et al. 2013

  • synonyms

    • @ref: 20215
    • synonym: Gibbsiella papilionis

@ref: 19207

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Gibbsiella

species: Gibbsiella dentisursi

full scientific name: Gibbsiella dentisursi Saito et al. 2013 emend. Brady et al. 2015

type strain: yes

Morphology

multimedia

  • @ref: 19207
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_23818.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 19207
  • name: BHI MEDIUM (DSMZ Medium 215)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/215
  • composition: Name: BHI MEDIUM (DSMZ Medium 215) Composition: Brain heart infusion 37.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
19207positivegrowth28mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

observation

  • @ref: 67770
  • observation: quinones: Q-8

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinent
19207oral cavity of a bearJapanJPNAsia
67770Bear oral cavity

isolation source categories

Cat1Cat2
#Host#Mammals
#Host Body-Site#Oral cavity and airways

Safety information

risk assessment

  • @ref: 19207
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
19207Gibbsiella dentisursi gene for 16S ribosomal RNA, partial sequenceAB5664151535ena796890
67770Gibbsiella dentisursi strain DSM 23818 16S ribosomal RNA gene, partial sequenceKT0364101344ena796890

GC content

@refGC-contentmethod
1920755.0high performance liquid chromatography (HPLC)
6777055high performance liquid chromatography (HPLC)

External links

@ref: 19207

culture collection no.: DSM 23818, DSMZ 23818, JCM 17201, NUM 1720, KCTC 5981

straininfo link

  • @ref: 87252
  • straininfo: 379616

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22500952Gibbsiella dentisursi sp. nov., isolated from the bear oral cavity.Saito M, Shinozaki-Kuwahara N, Takada KMicrobiol Immunol10.1111/j.1348-0421.2012.00464.x2012Animals, Bacterial Typing Techniques, Base Composition, Cluster Analysis, DNA Gyrase/genetics, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, DNA-Directed RNA Polymerases/genetics, Enterobacteriaceae/*classification/genetics/*isolation & purification, Fatty Acids/analysis, Molecular Sequence Data, Mouth/*microbiology, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Ursidae/*microbiologyGenetics
Phylogeny23264501Gibbsiella papilionis sp. nov., isolated from the intestinal tract of the butterfly Mycalesis gotama, and emended description of the genus Gibbsiella.Kim PS, Shin NR, Kim JY, Yun JH, Hyun DW, Bae JWInt J Syst Evol Microbiol10.1099/ijs.0.045880-02012Animals, Bacterial Typing Techniques, Base Composition, Butterflies/*microbiology, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification, Fatty Acids/analysis, Intestines/microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Ubiquinone/analysisGenetics
Phylogeny26432794Gibbsiella papilionis Kim et al. 2013 is a later heterotypic synonym of Gibbsiella dentisursi Saito et al. 2013.Brady C, Irisawa T, Iino T, Ohkuma M, Arnold D, Denman SInt J Syst Evol Microbiol10.1099/ijsem.0.0006492015Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics, Fatty Acids/analysis, Genes, Bacterial, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAGenetics
Phylogeny26978486Chania multitudinisentens gen. nov., sp. nov., an N-acyl-homoserine-lactone-producing bacterium in the family Enterobacteriaceae isolated from landfill site soil.Ee R, Madhaiyan M, Ji L, Lim YL, Nor NM, Tee KK, Chen JW, Yin WFInt J Syst Evol Microbiol10.1099/ijsem.0.0010252016Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Genes, Bacterial, Homoserine/*biosynthesis, Lactones/*metabolism, Malaysia, Multilocus Sequence Typing, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistry, Waste Disposal FacilitiesTranscriptome

Reference

@idauthorscataloguedoi/urltitle
19207Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23818)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23818
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
87252Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID379616.1StrainInfo: A central database for resolving microbial strain identifiers