Strain identifier

BacDive ID: 22995

Type strain: Yes

Species: Brenneria goodwinii

Strain Designation: R-43656

Strain history: <- LMG <- I. Cleenwerck, Univ. Ghent, Belgium <- T. Coutinho, FABI, University of Pretoria <- S. E. Denman, Centre for Forestry and Climatic Change, Surrey, United Kingdom; FRB 141

NCBI tax ID(s): 1109412 (species)

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General

@ref: 19177

BacDive-ID: 22995

DSM-Number: 27058

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-negative, motile, rod-shaped, plant pathogen

description: Brenneria goodwinii R-43656 is a facultative anaerobe, mesophilic, Gram-negative plant pathogen that was isolated from Quercus robur exhibiting symptoms of acute oak decline.

NCBI tax id

  • NCBI tax id: 1109412
  • Matching level: species

strain history

  • @ref: 19177
  • history: <- LMG <- I. Cleenwerck, Univ. Ghent, Belgium <- T. Coutinho, FABI, University of Pretoria <- S. E. Denman, Centre for Forestry and Climatic Change, Surrey, United Kingdom; FRB 141

doi: 10.13145/bacdive22995.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Pectobacteriaceae
  • genus: Brenneria
  • species: Brenneria goodwinii
  • full scientific name: Brenneria goodwinii Denman et al. 2012

@ref: 19177

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Pectobacteriaceae

genus: Brenneria

species: Brenneria goodwinii

full scientific name: Brenneria goodwinii Denman et al. 2012

strain designation: R-43656

type strain: yes

Morphology

cell morphology

  • @ref: 30518
  • gram stain: negative
  • cell length: 1.15 µm
  • cell width: 0.8 µm
  • cell shape: rod-shaped
  • motility: yes

pigmentation

  • @ref: 30518
  • production: yes

multimedia

  • @ref: 19177
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_27058.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 19177
  • name: NUTRIENT AGAR (DSMZ Medium 1)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1
  • composition: Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
19177positivegrowth37mesophilic
30518positivegrowth10-40

Physiology and metabolism

oxygen tolerance

  • @ref: 30518
  • oxygen tolerance: facultative anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3051822599arabinose+carbon source
3051822653asparagine+carbon source
3051835391aspartate+carbon source
3051815740formate+carbon source
3051828757fructose+carbon source
3051828260galactose+carbon source
3051824265gluconate+carbon source
3051817234glucose+carbon source
3051817754glycerol+carbon source
3051817716lactose+carbon source
3051829864mannitol+carbon source
3051837684mannose+carbon source
3051828053melibiose+carbon source
3051837657methyl D-glucoside+carbon source
30518506227N-acetylglucosamine+carbon source
3051851850methyl pyruvate+carbon source
3051816634raffinose+carbon source
3051817822serine+carbon source
3051830911sorbitol+carbon source
3051830031succinate+carbon source
3051817992sucrose+carbon source
3051827082trehalose+carbon source
6836817632nitrate-reduction
6836830849L-arabinose+fermentation
6836827613amygdalin+fermentation
6836828053melibiose+fermentation
6836817992sucrose+fermentation
6836862345L-rhamnose+fermentation
6836830911sorbitol+fermentation
6836817268myo-inositol+fermentation
6836816899D-mannitol+fermentation
6836817634D-glucose+fermentation
6836827897tryptophan-energy source
6836816199urea-hydrolysis
6836816947citrate-assimilation
6836818257ornithine-degradation
6836825094lysine-degradation

metabolite production

@refChebi-IDmetaboliteproduction
6836817997dinitrogenno
6836816301nitriteno
6836815688acetoinyes
6836835581indoleno
6836816136hydrogen sulfideno

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin+
6836835581indole-

enzymes

@refvalueactivityec
68368cytochrome oxidase-1.9.3.1
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase-4.1.1.17
68368lysine decarboxylase-4.1.1.18

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOXNO2N2
19177++-------+-+++++++++-
19177---------+++++++++++---
19177++-------+-+++++++++-

Isolation, sampling and environmental information

isolation

  • @ref: 19177
  • sample type: Quercus robur exhibiting symptoms of acute oak decline
  • host species: Quercus robur
  • geographic location: Leicestershire, Outwood, Loughborough
  • country: United Kingdom
  • origin.country: GBR
  • continent: Europe

isolation source categories

  • Cat1: #Host
  • Cat2: #Plants
  • Cat3: #Tree

taxonmaps

  • @ref: 69479
  • File name: preview.99_2992.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_1313;97_1877;98_2305;99_2992&stattab=map
  • Last taxonomy: Brenneria goodwinii subclade
  • 16S sequence: JN544202
  • Sequence Identity:
  • Total samples: 352
  • soil counts: 6
  • aquatic counts: 25
  • animal counts: 260
  • plant counts: 61

Safety information

risk assessment

  • @ref: 19177
  • pathogenicity plant: yes
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Brenneria goodwinii strain LMG 26270 16S ribosomal RNA gene, partial sequenceKM0322711450ena1109412
19177Brenneria goodwinii strain LMG 26270 16S ribosomal RNA gene, partial sequenceJN5442021344ena1109412

GC content

  • @ref: 30518
  • GC-content: 52.5

External links

@ref: 19177

culture collection no.: DSM 27058, BCC 845, FRB 141, LMG 26270, NCPPB 4484

straininfo link

  • @ref: 87241
  • straininfo: 371027

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny22140177Brenneria goodwinii sp. nov., associated with acute oak decline in the UK.Denman S, Brady C, Kirk S, Cleenwerck I, Venter S, Coutinho T, De Vos PInt J Syst Evol Microbiol10.1099/ijs.0.037879-02011Bacterial Typing Techniques, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification, Fatty Acids/analysis, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, Phenotype, *Phylogeny, Plant Diseases/*microbiology, Quercus/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, United KingdomGenetics
Phylogeny25385993Brenneria populi sp. nov., isolated from symptomatic bark of Populusxeuramericana canker.Li Y, Fang W, Xue H, Liang WX, Wang LF, Tian GZ, Wang XZ, Lin CL, Li X, Piao CGInt J Syst Evol Microbiol10.1099/ijs.0.066068-02014Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Enterobacteriaceae/*classification/genetics/isolation & purification, Fatty Acids/chemistry, Genes, Bacterial, Molecular Sequence Data, Multilocus Sequence Typing, Nucleic Acid Hybridization, *Phylogeny, Plant Bark/*microbiology, Populus/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, SpainGenetics
Phylogeny33464391Bruguierivorax albus gen. nov. sp. nov. Isolated from Mangrove Sediment and Proposal of Bruguierivoracaceae fam. nov.Li M, Liu K, Liu Y, Gao C, Yi XCurr Microbiol10.1007/s00284-020-02311-w2021Bacterial Typing Techniques, China, DNA, Bacterial/genetics, Enterobacteriaceae, *Fatty Acids, Gammaproteobacteria, *Phospholipids, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNATranscriptome
Phylogeny33903975Affinibrenneria salicis gen. nov. sp. nov. isolated from Salix matsudana bark canker.Bian DR, Xue H, Wang GM, Piao CG, Li YArch Microbiol10.1007/s00203-021-02323-52021Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, *Enterobacteriaceae/classification/genetics/isolation & purification, Fatty Acids, Gammaproteobacteria/genetics, Nucleic Acid Hybridization, Phospholipids, Phylogeny, Plant Bark/microbiology, RNA, Ribosomal, 16S/genetics, *Salix/microbiology, Sequence Analysis, DNA, Species SpecificityTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
19177Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27058)https://www.dsmz.de/collection/catalogue/details/culture/DSM-27058
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
30518Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604126850
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68368Automatically annotated from API 20E
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
87241Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID371027.1StrainInfo: A central database for resolving microbial strain identifiers