Strain identifier
BacDive ID: 22994
Type strain:
Species: Dietzia aurantiaca
Strain history: E. Falsen CCUG 35676.
NCBI tax ID(s): 983873 (species)
General
@ref: 19132
BacDive-ID: 22994
DSM-Number: 45868
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped, human pathogen
description: Dietzia aurantiaca DSM 45868 is an aerobe, mesophilic, Gram-positive human pathogen that was isolated from cerebrospinal fluid from a 24-year-old woman.
NCBI tax id
- NCBI tax id: 983873
- Matching level: species
strain history
@ref | history |
---|---|
19132 | <- CCUG; CCUG 35676 |
67770 | E. Falsen CCUG 35676. |
doi: 10.13145/bacdive22994.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Mycobacteriales
- family: Dietziaceae
- genus: Dietzia
- species: Dietzia aurantiaca
- full scientific name: Dietzia aurantiaca Kämpfer et al. 2012
@ref: 19132
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Dietziaceae
genus: Dietzia
species: Dietzia aurantiaca
full scientific name: Dietzia aurantiaca Kämpfer et al. 2012
type strain: yes
Morphology
cell morphology
- @ref: 30287
- gram stain: positive
- cell width: 1.0-1.5 µm
- cell shape: coccus-shaped
pigmentation
- @ref: 30287
- production: yes
Culture and growth conditions
culture medium
- @ref: 19132
- name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
- growth: yes
- link: https://mediadive.dsmz.de/medium/65
- composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
19132 | positive | growth | 37 | mesophilic |
30287 | positive | growth | 04-37 | |
30287 | positive | optimum | 30 | mesophilic |
67770 | positive | growth | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30287 | positive | growth | 5.5-12.5 | alkaliphile |
30287 | positive | optimum | 07-08 |
Physiology and metabolism
oxygen tolerance
- @ref: 30287
- oxygen tolerance: aerobe
spore formation
- @ref: 30287
- spore formation: no
halophily
- @ref: 30287
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: <12 %
observation
- @ref: 67770
- observation: quinones: MK-8(H2), MK-7(H2)
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30287 | 22599 | arabinose | + | carbon source |
30287 | 17057 | cellobiose | + | carbon source |
30287 | 17234 | glucose | + | carbon source |
30287 | 506227 | N-acetylglucosamine | + | carbon source |
30287 | 17992 | sucrose | + | carbon source |
68379 | 17632 | nitrate | + | reduction |
68379 | 4853 | esculin | - | hydrolysis |
68379 | 16199 | urea | - | hydrolysis |
68379 | 5291 | gelatin | - | hydrolysis |
68379 | 17634 | D-glucose | - | fermentation |
68379 | 16988 | D-ribose | - | fermentation |
68379 | 65327 | D-xylose | - | fermentation |
68379 | 16899 | D-mannitol | - | fermentation |
68379 | 17306 | maltose | - | fermentation |
68379 | 17716 | lactose | - | fermentation |
68379 | 17992 | sucrose | - | fermentation |
68379 | 28087 | glycogen | - | fermentation |
68381 | 29016 | arginine | - | hydrolysis |
68381 | 16988 | D-ribose | - | builds acid from |
68381 | 16899 | D-mannitol | - | builds acid from |
68381 | 30911 | sorbitol | - | builds acid from |
68381 | 17716 | lactose | - | builds acid from |
68381 | 27082 | trehalose | - | builds acid from |
68381 | 16634 | raffinose | - | builds acid from |
68381 | 17992 | sucrose | - | builds acid from |
68381 | 30849 | L-arabinose | - | builds acid from |
68381 | 18333 | D-arabitol | - | builds acid from |
68381 | 40585 | alpha-cyclodextrin | - | builds acid from |
68381 | 606565 | hippurate | - | hydrolysis |
68381 | 28087 | glycogen | - | builds acid from |
68381 | 27941 | pullulan | - | builds acid from |
68381 | 17306 | maltose | - | builds acid from |
68381 | 28053 | melibiose | - | builds acid from |
68381 | 6731 | melezitose | - | builds acid from |
68381 | 320055 | methyl beta-D-glucopyranoside | - | builds acid from |
68381 | 16443 | D-tagatose | - | builds acid from |
68381 | 16199 | urea | - | hydrolysis |
metabolite production
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- production: no
metabolite tests
- @ref: 68381
- Chebi-ID: 15688
- metabolite: acetoin
- voges-proskauer-test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
30287 | catalase | + | 1.11.1.6 |
30287 | cytochrome oxidase | + | 1.9.3.1 |
68381 | urease | - | 3.5.1.5 |
68381 | beta-mannosidase | - | 3.2.1.25 |
68381 | glycyl tryptophan arylamidase | - | |
68381 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68381 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68381 | beta-galactosidase | - | 3.2.1.23 |
68381 | Alanyl-Phenylalanyl-Proline arylamidase | - | |
68381 | alkaline phosphatase | - | 3.1.3.1 |
68381 | alpha-galactosidase | - | 3.2.1.22 |
68381 | beta-glucuronidase | - | 3.2.1.31 |
68381 | beta-glucosidase | - | 3.2.1.21 |
68381 | arginine dihydrolase | - | 3.5.3.6 |
68379 | catalase | + | 1.11.1.6 |
68379 | gelatinase | - | |
68379 | urease | - | 3.5.1.5 |
68379 | beta-glucosidase | - | 3.2.1.21 |
68379 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68379 | alpha-glucosidase | + | 3.2.1.20 |
68379 | beta-galactosidase | - | 3.2.1.23 |
68379 | beta-glucuronidase | - | 3.2.1.31 |
68379 | alkaline phosphatase | + | 3.1.3.1 |
68379 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68379 | pyrazinamidase | - | 3.5.1.B15 |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68382 | esterase (C 4) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | lipase (C 14) | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | valine arylamidase | - | |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | trypsin | - | 3.4.21.4 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | acid phosphatase | - | 3.1.3.2 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
API coryne
@ref | NIT | PYZ | PYRA | PAL | beta GUR | beta GAL | alpha GLU | beta NAG | ESC | URE | GEL | Control | GLU | RIB | XYL | MAN | MAL | LAC | SAC | GLYG | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
52909 | + | - | - | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
52909 | - | + | + | + | - | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - |
API rID32STR
@ref | ADH Arg | beta GLU | beta GAR | beta GUR | alpha GAL | PAL | RIB | MAN | SOR | LAC | TRE | RAF | SAC | LARA | DARL | CDEX | VP | APPA | beta GAL | PyrA | beta NAG | GTA | HIP | GLYG | PUL | MAL | MEL | MLZ | Mbeta DG | TAG | beta MAN | URE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
52909 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | sampling date |
---|---|---|---|---|---|---|
19132 | cerebrospinal fluid from a 24-year-old woman | Göteborg | Sweden | SWE | Europe | |
52909 | Human cerebrospinal fluid,24-yr-old woman | Göteborg | Sweden | SWE | Europe | 1996-04-15 |
67770 | Human cerebrospinal fluid |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Patient | |
#Host | #Human | |
#Host Body Product | #Fluids | #Cerebrospinal fluid |
#Host | #Human | #Female |
Safety information
risk assessment
- @ref: 19132
- pathogenicity human: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19132
- description: Dietzia aurantiaca partial 16S rRNA gene, type strain CCUG 35676T
- accession: FR821260
- length: 1390
- database: ena
- NCBI tax ID: 983873
External links
@ref: 19132
culture collection no.: DSM 45868, CCUG 35676, JCM 17645
straininfo link
- @ref: 87240
- straininfo: 56686
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 21478395 | Dietzia aurantiaca sp. nov., isolated from a human clinical specimen. | Kampfer P, Falsen E, Frischmann A, Busse HJ | Int J Syst Evol Microbiol | 10.1099/ijs.0.032557-0 | 2011 | Actinomycetales/*classification/genetics/*isolation & purification, Actinomycetales Infections/*microbiology, Bacterial Typing Techniques, Cerebrospinal Fluid/microbiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Female, Glycolipids/analysis, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spores, Bacterial/cytology, Sweden, Vitamin K 2/analysis | Pathogenicity |
Metabolism | 35306084 | Aerobic biotransformation of 6:2 fluorotelomer sulfonate by Dietzia aurantiaca J3 under sulfur-limiting conditions. | Mendez V, Holland S, Bhardwaj S, McDonald J, Khan S, O'Carroll D, Pickford R, Richards S, O'Farrell C, Coleman N, Lee M, Manefield MJ | Sci Total Environ | 10.1016/j.scitotenv.2022.154587 | 2022 | ATP-Binding Cassette Transporters/metabolism, Actinobacteria, Alkanesulfonates/analysis, Biotransformation, *Fluorocarbons/analysis, Membrane Transport Proteins/metabolism, Mixed Function Oxygenases/metabolism, Proteomics, RNA, Ribosomal, 16S/genetics, Sulfur/metabolism, *Water Pollutants, Chemical/analysis | Phylogeny |
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
19132 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45868) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-45868 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
30287 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26628 | 28776041 | |
52909 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 35676) | https://www.ccug.se/strain?id=35676 | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68379 | Automatically annotated from API Coryne | |||||
68381 | Automatically annotated from API rID32STR | |||||
68382 | Automatically annotated from API zym | |||||
87240 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID56686.1 | StrainInfo: A central database for resolving microbial strain identifiers |