Strain identifier

BacDive ID: 22994

Type strain: Yes

Species: Dietzia aurantiaca

Strain history: E. Falsen CCUG 35676.

NCBI tax ID(s): 983873 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 19132

BacDive-ID: 22994

DSM-Number: 45868

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped, human pathogen

description: Dietzia aurantiaca DSM 45868 is an aerobe, mesophilic, Gram-positive human pathogen that was isolated from cerebrospinal fluid from a 24-year-old woman.

NCBI tax id

  • NCBI tax id: 983873
  • Matching level: species

strain history

@refhistory
19132<- CCUG; CCUG 35676
67770E. Falsen CCUG 35676.

doi: 10.13145/bacdive22994.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Mycobacteriales
  • family: Dietziaceae
  • genus: Dietzia
  • species: Dietzia aurantiaca
  • full scientific name: Dietzia aurantiaca Kämpfer et al. 2012

@ref: 19132

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Dietziaceae

genus: Dietzia

species: Dietzia aurantiaca

full scientific name: Dietzia aurantiaca Kämpfer et al. 2012

type strain: yes

Morphology

cell morphology

  • @ref: 30287
  • gram stain: positive
  • cell width: 1.0-1.5 µm
  • cell shape: coccus-shaped

pigmentation

  • @ref: 30287
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 19132
  • name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/65
  • composition: Name: GYM STREPTOMYCES MEDIUM (DSMZ Medium 65) Composition: Agar 18.0 g/l Malt extract 10.0 g/l Yeast extract 4.0 g/l Glucose 4.0 g/l CaCO3 2.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
19132positivegrowth37mesophilic
30287positivegrowth04-37
30287positiveoptimum30mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30287positivegrowth5.5-12.5alkaliphile
30287positiveoptimum07-08

Physiology and metabolism

oxygen tolerance

  • @ref: 30287
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30287
  • spore formation: no

halophily

  • @ref: 30287
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <12 %

observation

  • @ref: 67770
  • observation: quinones: MK-8(H2), MK-7(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3028722599arabinose+carbon source
3028717057cellobiose+carbon source
3028717234glucose+carbon source
30287506227N-acetylglucosamine+carbon source
3028717992sucrose+carbon source
6837917632nitrate+reduction
683794853esculin-hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose-fermentation
6837916988D-ribose-fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose-fermentation
6837917716lactose-fermentation
6837917992sucrose-fermentation
6837928087glycogen-fermentation
6838129016arginine-hydrolysis
6838116988D-ribose-builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose-builds acid from
6838127082trehalose-builds acid from
6838116634raffinose-builds acid from
6838117992sucrose-builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin-builds acid from
68381606565hippurate-hydrolysis
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose-builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside-builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: no

metabolite tests

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • voges-proskauer-test: -

enzymes

@refvalueactivityec
30287catalase+1.11.1.6
30287cytochrome oxidase+1.9.3.1
68381urease-3.5.1.5
68381beta-mannosidase-3.2.1.25
68381glycyl tryptophan arylamidase-
68381N-acetyl-beta-glucosaminidase-3.2.1.52
68381pyrrolidonyl arylamidase-3.4.19.3
68381beta-galactosidase-3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alkaline phosphatase-3.1.3.1
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase-3.2.1.21
68381arginine dihydrolase-3.5.3.6
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase-3.2.1.21
68379N-acetyl-beta-glucosaminidase-3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase-3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase-3.4.19.3
68379pyrazinamidase-3.5.1.B15
68382alkaline phosphatase+3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)+
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
52909+--+--+-------------+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
52909-+++-+-----+--------

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
52909--------------------------------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
19132cerebrospinal fluid from a 24-year-old womanGöteborgSwedenSWEEurope
52909Human cerebrospinal fluid,24-yr-old womanGöteborgSwedenSWEEurope1996-04-15
67770Human cerebrospinal fluid

isolation source categories

Cat1Cat2Cat3
#Infection#Patient
#Host#Human
#Host Body Product#Fluids#Cerebrospinal fluid
#Host#Human#Female

Safety information

risk assessment

  • @ref: 19132
  • pathogenicity human: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 19132
  • description: Dietzia aurantiaca partial 16S rRNA gene, type strain CCUG 35676T
  • accession: FR821260
  • length: 1390
  • database: ena
  • NCBI tax ID: 983873

External links

@ref: 19132

culture collection no.: DSM 45868, CCUG 35676, JCM 17645

straininfo link

  • @ref: 87240
  • straininfo: 56686

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny21478395Dietzia aurantiaca sp. nov., isolated from a human clinical specimen.Kampfer P, Falsen E, Frischmann A, Busse HJInt J Syst Evol Microbiol10.1099/ijs.0.032557-02011Actinomycetales/*classification/genetics/*isolation & purification, Actinomycetales Infections/*microbiology, Bacterial Typing Techniques, Cerebrospinal Fluid/microbiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Female, Glycolipids/analysis, Humans, Molecular Sequence Data, Nucleic Acid Hybridization, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Spores, Bacterial/cytology, Sweden, Vitamin K 2/analysisPathogenicity
Metabolism35306084Aerobic biotransformation of 6:2 fluorotelomer sulfonate by Dietzia aurantiaca J3 under sulfur-limiting conditions.Mendez V, Holland S, Bhardwaj S, McDonald J, Khan S, O'Carroll D, Pickford R, Richards S, O'Farrell C, Coleman N, Lee M, Manefield MJSci Total Environ10.1016/j.scitotenv.2022.1545872022ATP-Binding Cassette Transporters/metabolism, Actinobacteria, Alkanesulfonates/analysis, Biotransformation, *Fluorocarbons/analysis, Membrane Transport Proteins/metabolism, Mixed Function Oxygenases/metabolism, Proteomics, RNA, Ribosomal, 16S/genetics, Sulfur/metabolism, *Water Pollutants, Chemical/analysisPhylogeny

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
19132Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 45868)https://www.dsmz.de/collection/catalogue/details/culture/DSM-45868
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30287Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2662828776041
52909Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 35676)https://www.ccug.se/strain?id=35676
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
87240Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID56686.1StrainInfo: A central database for resolving microbial strain identifiers