Strain identifier

BacDive ID: 22991

Type strain: Yes

Species: Desulfoconvexum algidum

Strain Designation: JHA1

Strain history: M. Koenneke JHA1.

NCBI tax ID(s): 453224 (species)

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General

@ref: 19252

BacDive-ID: 22991

DSM-Number: 21856

keywords: 16S sequence, Bacteria, anaerobe, psychrophilic, Gram-negative, motile, rod-shaped

description: Desulfoconvexum algidum JHA1 is an anaerobe, psychrophilic, Gram-negative bacterium that was isolated from permanently cold marine sediment.

NCBI tax id

  • NCBI tax id: 453224
  • Matching level: species

strain history

@refhistory
19252<- M. Könneke, Univ. Oldenburg; JHA1 <- M. Könneke {2001}
67770M. Koenneke JHA1.

doi: 10.13145/bacdive22991.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Deltaproteobacteria
  • order: Desulfobacterales
  • family: Desulfobacteraceae
  • genus: Desulfoconvexum
  • species: Desulfoconvexum algidum
  • full scientific name: Desulfoconvexum algidum Könneke et al. 2013

@ref: 19252

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfobacterales

family: Desulfobacteraceae

genus: Desulfoconvexum

species: Desulfoconvexum algidum

full scientific name: Desulfoconvexum algidum Könneke et al. 2013

strain designation: JHA1

type strain: yes

Morphology

cell morphology

  • @ref: 30756
  • gram stain: negative
  • cell length: 2.25 µm
  • cell width: 1.5 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 19252
  • incubation period: >14 days

Culture and growth conditions

culture medium

  • @ref: 19252
  • name: DESULFOBACTERIUM MEDIUM (DSMZ Medium 383)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/383
  • composition: Name: DESULFOBACTERIUM MEDIUM (DSMZ Medium 383; with strain-specific modifications) Composition: NaCl 20.9372 g/l Na2SO4 2.99103 g/l MgCl2 x 6 H2O 2.99103 g/l Na2CO3 0.997009 g/l KCl 0.498504 g/l Na2S x 9 H2O 0.398804 g/l NH4Cl 0.299103 g/l KH2PO4 0.199402 g/l CaCl2 x 2 H2O 0.149551 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l NaOH 0.000498504 g/l Sodium resazurin 0.000498504 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Pyridoxine hydrochloride 9.97009e-05 g/l ZnCl2 6.97906e-05 g/l Riboflavin 4.98504e-05 g/l Calcium D-(+)-pantothenate 4.98504e-05 g/l Thiamine HCl 4.98504e-05 g/l p-Aminobenzoic acid 4.98504e-05 g/l (DL)-alpha-Lipoic acid 4.98504e-05 g/l Nicotinic acid 4.98504e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l Folic acid 1.99402e-05 g/l Biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l Na2WO4 x 2 H2O 3.98804e-06 g/l Na2SeO3 x 5 H2O 2.99103e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Vitamin B12 9.97009e-07 g/l None Distilled water

culture temp

@refgrowthtypetemperaturerange
19252positivegrowth15psychrophilic
30756positivegrowth0-20psychrophilic
30756positiveoptimum15psychrophilic
67770positivegrowth15psychrophilic

culture pH

@refabilitytypepHPH range
30756positivegrowth5.5-8.5alkaliphile
30756positiveoptimum7.3

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
19252anaerobe
30756anaerobe

spore formation

  • @ref: 30756
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
30756NaClpositivegrowth0-5 %
30756NaClpositiveoptimum2.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3075616449alanine+carbon source
3075628885butanol+carbon source
3075627689decanoate+carbon source
3075616236ethanol+carbon source
3075615740formate+carbon source
3075617754glycerol+carbon source
3075615428glycine+carbon source
3075624996lactate+carbon source
3075625115malate+carbon source
3075629864mannitol+carbon source
3075626271proline+carbon source
3075617822serine+carbon source
3075630911sorbitol+carbon source
3075631011valerate+carbon source

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
19252permanently cold marine sedimentnorth-west coast of Svalbard, SmeerenburgfjordenNorwayNOREurope79.711.0833
67770Permanently cold marine sediment of an Arctic fjord on the north-west coast of Svalbard

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment
#Condition#Psychrophilic (<10°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_89104.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_40;96_8830;97_10618;98_13018;99_89104&stattab=map
  • Last taxonomy: Desulfoconvexum algidum
  • 16S sequence: EF442984
  • Sequence Identity:
  • Total samples: 1
  • aquatic counts: 1

Safety information

risk assessment

  • @ref: 19252
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 19252
  • description: Desulfoconvexum algidum strain JHA1 16S ribosomal RNA gene, partial sequence
  • accession: EF442984
  • length: 1367
  • database: ena
  • NCBI tax ID: 453224

GC content

@refGC-contentmethod
1925246high performance liquid chromatography (HPLC)
3075646

External links

@ref: 19252

culture collection no.: DSM 21856, JCM 16085

straininfo link

  • @ref: 87237
  • straininfo: 398964

literature

  • topic: Phylogeny
  • Pubmed-ID: 22659505
  • title: Desulfoconvexum algidum gen. nov., sp. nov., a psychrophilic sulfate-reducing bacterium isolated from a permanently cold marine sediment.
  • authors: Konneke M, Kuever J, Galushko A, Jorgensen BB
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.043703-0
  • year: 2012
  • mesh: Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Deltaproteobacteria/*classification/genetics/isolation & purification, Fatty Acids/analysis, Geologic Sediments/*microbiology, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Sulfur-Reducing Bacteria/*classification/genetics/isolation & purification, Svalbard
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
19252Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21856)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21856
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30756Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2708728776041
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
87237Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID398964.1StrainInfo: A central database for resolving microbial strain identifiers