Strain identifier

BacDive ID: 22990

Type strain: Yes

Species: Desulfatitalea tepidiphila

Strain Designation: S28bF

Culture col. no.: DSM 23472, NBRC 107166

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 19243

BacDive-ID: 22990

DSM-Number: 23472

keywords: gram-negative, mesophilic, anaerobe, Bacteria, 16S sequence, genome sequence, motile, rod-shaped

description: Desulfatitalea tepidiphila S28bF is an anaerobe, mesophilic, gram-negative bacterium that was isolated from tidal flat sediment.

strain history: <- Y. Higashioka, Hokkaido University; S28bF

doi: 10.13145/bacdive22990.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Deltaproteobacteria
  • order: Desulfobacterales
  • family: Desulfobacteraceae
  • genus: Desulfatitalea
  • species: Desulfatitalea tepidiphila
  • full scientific name: Desulfatitalea tepidiphila Higashioka et al. 2013

@ref: 19243

domain: Bacteria

phylum: Proteobacteria

class: Deltaproteobacteria

order: Desulfobacterales

family: Desulfobacteraceae

genus: Desulfatitalea

species: Desulfatitalea tepidiphila

full scientific name: Desulfatitalea tepidiphila Higashioka et al. 2013

strain designation: S28bF

type strain: yes

Morphology

cell morphology

  • @ref: 30733
  • gram stain: negative
  • cell length: 2.75 µm
  • cell width: 0.55 µm
  • cell shape: rod-shaped
  • motility: yes

colony morphology

  • @ref: 19243
  • incubation period: 3-7 days

Culture and growth conditions

culture medium

  • @ref: 19243
  • name: DESULFUROMUSA MEDIUM (DSMZ Medium 195a), anaerobic
  • growth: yes
  • link: https://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium195a.pdf

culture temp

@refgrowthtypetemperaturerange
19243positivegrowth37mesophilic
30733positivegrowth13-45
30733positiveoptimum38mesophilic

culture pH

@refabilitytypepH
30733positivegrowth6.2-7.9
30733positiveoptimum7.05

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
19243anaerobe
30733anaerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3073330089acetate+carbon source
3073315740formate+carbon source
3073324996lactate+carbon source
3073317272propionate+carbon source
3073315361pyruvate+carbon source
3073330031succinate+carbon source

Isolation, sampling and environmental information

isolation

  • @ref: 19243
  • sample type: tidal flat sediment
  • geographic location: Chiba, Urayasu, Sanban-ze (39° 39.0' N, 139° 55.5' E)
  • country: Japan
  • origin.country: JPN
  • continent: Asia
  • latitude: 35.642
  • longitude: 139.903

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Sediment
#Environmental#Aquatic#Tidal flat

Safety information

risk assessment

  • @ref: 19243
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 19243
  • description: Desulfatitalea tepidiphila gene for 16S ribosomal RNA, partial sequence, strain: S28bF
  • accession: AB614135
  • length: 1485
  • database: ena
  • NCBI tax ID: 1185843

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Desulfatitalea tepidiphila S28bFGCA_001293685contigncbi1185843
66792Desulfatitalea tepidiphila strain S28bF1185843.14wgspatric1185843

GC content

@refGC-contentmethod
1924356.6high performance liquid chromatography (HPLC)
3073356.6

External links

@ref: 19243

culture collection no.: DSM 23472, NBRC 107166

straininfo link

@refpassport
20218http://www.straininfo.net/strains/884842
20218http://www.straininfo.net/strains/884843

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
19243Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23472)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23472
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2706410.1099/ijs.0.043356-0
30733Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information27064
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)