Strain identifier
BacDive ID: 22987
Type strain: 
Species: Barrientosiimonas marina
Strain Designation: MSW-24
Strain history: <- SD Lee, Cheju National Univ.
NCBI tax ID(s): 1163776 (species)
version 8.1 (current version)
General
@ref: 19332
BacDive-ID: 22987
DSM-Number: 21415
keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, coccus-shaped
description: Barrientosiimonas marina MSW-24 is an aerobe, mesophilic, Gram-positive bacterium that was isolated from seawater.
NCBI tax id
- NCBI tax id: 1163776
- Matching level: species
strain history
| @ref | history |
|---|---|
| 19332 | <- S. D. Lee, Jeju National Univ., Rep. of Korea; MSW-24 |
| 67770 | DSM 21415 <-- S. D. Lee MSW-24. |
| 67771 | <- SD Lee, Cheju National Univ. |
doi: 10.13145/bacdive22987.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Dermacoccaceae
- genus: Barrientosiimonas
- species: Barrientosiimonas marina
- full scientific name: Barrientosiimonas marina (Lee 2013) Parag et al. 2015
synonyms
- @ref: 20215
- synonym: Tamlicoccus marinus
@ref: 19332
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Dermacoccaceae
genus: Barrientosiimonas
species: Barrientosiimonas marina
full scientific name: Barrientosiimonas marina (Lee 2013) Parag et al. 2015
strain designation: MSW-24
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility |
|---|---|---|---|---|---|
| 30725 | positive | 0.55 µm | 0.55 µm | coccus-shaped | no |
| 67771 | positive |
pigmentation
- @ref: 30725
- production: yes
Culture and growth conditions
culture medium
- @ref: 19332
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 19332 | positive | growth | 28 | mesophilic |
| 30725 | positive | growth | 20-42 | |
| 30725 | positive | optimum | 30 | mesophilic |
| 67770 | positive | growth | 28 | mesophilic |
| 67771 | positive | growth | 30 | mesophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30725 | positive | growth | 05-12 | alkaliphile |
| 30725 | positive | optimum | 8.5 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 30725 | aerobe |
| 67771 | aerobe |
spore formation
- @ref: 30725
- spore formation: no
halophily
| @ref | salt | growth | tested relation | concentration |
|---|---|---|---|---|
| 30725 | NaCl | positive | growth | 0-8 % |
| 30725 | NaCl | positive | optimum | 3 % |
observation
| @ref | observation |
|---|---|
| 30725 | aggregates in clumps |
| 67770 | quinones: MK-8(H4) |
| 67771 | quinones: MK-8(H4) |
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30725 | 17128 | adipate | + | carbon source |
| 30725 | 17234 | glucose | + | carbon source |
| 30725 | 17306 | maltose | + | carbon source |
| 30725 | 29864 | mannitol | + | carbon source |
| 30725 | 17632 | nitrate | + | reduction |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30725 | acid phosphatase | + | 3.1.3.2 |
| 30725 | alkaline phosphatase | + | 3.1.3.1 |
| 30725 | catalase | + | 1.11.1.6 |
| 30725 | gelatinase | + |
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 19332 | seawater | Mara Island, Jeju (33° 06' N 126° 16' E) | Republic of Korea | KOR | Asia |
| 67770 | Seawater | Mara Island, Jeju | Republic of Korea | KOR | Asia |
| 67771 | From seawater | Mara island, Jeju | Republic of Korea | KOR | Asia |
isolation source categories
- Cat1: #Environmental
- Cat2: #Aquatic
- Cat3: #Marine
taxonmaps
- @ref: 69479
- File name: preview.99_11725.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_844;97_986;98_8794;99_11725&stattab=map
- Last taxonomy: Barrientosiimonas
- 16S sequence: HE792770
- Sequence Identity:
- Total samples: 1666
- soil counts: 161
- aquatic counts: 155
- animal counts: 1304
- plant counts: 46
Safety information
risk assessment
- @ref: 19332
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19332
- description: Tamlicoccus marinus MSW-24 partial 16S rRNA gene, type strain MSW-24T
- accession: HE792770
- length: 1433
- database: ena
- NCBI tax ID: 1163776
GC content
| @ref | GC-content | method |
|---|---|---|
| 19332 | 71 | high performance liquid chromatography (HPLC) |
| 30725 | 71 | |
| 67771 | 71.0 |
External links
@ref: 19332
culture collection no.: DSM 21415, JCM 19562, KCTC 19485
straininfo link
- @ref: 87233
- straininfo: 405492
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 23041643 | Tamlicoccus marinus gen. nov., sp. nov., isolated from seawater. | Lee SD | Int J Syst Evol Microbiol | 10.1099/ijs.0.043117-0 | 2012 | Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Cell Wall/chemistry, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis, Water Microbiology | Genetics |
| Phylogeny | 26060216 | Barrientosiimonas endolithica sp. nov., isolated from pebbles, reclassification of the only species of the genus Tamlicoccus, Tamlicoccus marinus Lee 2013, as Barrientosiimonas marina comb. nov. and emended description of the genus Barrientosiimonas. | Parag B, Sasikala C, Ramana CV | Int J Syst Evol Microbiol | 10.1099/ijs.0.000374 | 2015 | *Actinomycetales/classification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, India, Lysine, Molecular Sequence Data, Nucleic Acid Hybridization/genetics, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 19332 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21415) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21415 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30725 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27056 | 28776041 | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
| 69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
| 87233 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID405492.1 | StrainInfo: A central database for resolving microbial strain identifiers |