Strain identifier

BacDive ID: 22975

Type strain: Yes

Species: Delftia litopenaei

Strain Designation: wsw-7

Strain history: <- LMG <- W.-M. Chen, Natl. Kaohsiung Marine Univ. Taiwan

NCBI tax ID(s): 747302 (species)

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General

@ref: 19178

BacDive-ID: 22975

DSM-Number: 27241

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Delftia litopenaei wsw-7 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from freshwater shrimp culture pond.

NCBI tax id

  • NCBI tax id: 747302
  • Matching level: species

strain history

  • @ref: 19178
  • history: <- LMG <- W.-M. Chen, Natl. Kaohsiung Marine Univ. Taiwan

doi: 10.13145/bacdive22975.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Comamonadaceae
  • genus: Delftia
  • species: Delftia litopenaei
  • full scientific name: Delftia litopenaei Chen et al. 2012

@ref: 19178

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Comamonadaceae

genus: Delftia

species: Delftia litopenaei

full scientific name: Delftia litopenaei Chen et al. 2012

strain designation: wsw-7

type strain: yes

Morphology

cell morphology

  • @ref: 30501
  • gram stain: negative
  • cell length: 1.75 µm
  • cell width: 0.65 µm
  • cell shape: rod-shaped
  • motility: yes

multimedia

  • @ref: 19178
  • multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_27241.jpg
  • intellectual property rights: © Leibniz-Institut DSMZ

Culture and growth conditions

culture medium

  • @ref: 19178
  • name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1a
  • composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
19178positivegrowth28mesophilic
30501positivegrowth04-40
30501positiveoptimum30mesophilic

culture pH

@refabilitytypepHPH range
30501positivegrowth05-09alkaliphile
30501positiveoptimum6.5

Physiology and metabolism

oxygen tolerance

  • @ref: 30501
  • oxygen tolerance: aerobe

spore formation

  • @ref: 30501
  • spore formation: no

halophily

@refsaltgrowthtested relationconcentration
30501NaClpositivegrowth0-3 %
30501NaClpositiveoptimum0.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3050130089acetate+carbon source
3050121217L-alaninamide+carbon source
3050116449alanine+carbon source
3050122653asparagine+carbon source
3050135391aspartate+carbon source
3050123652dextrin+carbon source
3050115740formate+carbon source
3050128757fructose+carbon source
3050124265gluconate+carbon source
3050129987glutamate+carbon source
3050127570histidine+carbon source
3050117240itaconate+carbon source
3050124996lactate+carbon source
3050125017leucine+carbon source
3050129864mannitol+carbon source
3050128044phenylalanine+carbon source
3050126271proline+carbon source
3050117272propionate+carbon source
3050151850methyl pyruvate+carbon source
3050126490quinate+carbon source
3050130031succinate+carbon source
3050126986threonine+carbon source
3050153423tween 40+carbon source
3050153426tween 80+carbon source
3050117632nitrate+reduction

enzymes

@refvalueactivityec
30501acid phosphatase+3.1.3.2
30501alkaline phosphatase+3.1.3.1
30501catalase+1.11.1.6
30501cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 19178
  • sample type: freshwater shrimp culture pond
  • geographic location: Pingtung
  • country: Taiwan
  • origin.country: TWN
  • continent: Asia
  • latitude: 22.5781
  • longitude: 120.604

isolation source categories

Cat1Cat2Cat3
#Engineered#Food production#Aquaculture
#Environmental#Aquatic#Freshwater
#Environmental#Aquatic#Pond (small)
#Host#Arthropoda#Crustacea

Safety information

risk assessment

  • @ref: 19178
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 19178
  • description: Delftia litopenaei strain wsw-7 16S ribosomal RNA gene, partial sequence
  • accession: GU721027
  • length: 1418
  • database: ena
  • NCBI tax ID: 747302

GC content

  • @ref: 30501
  • GC-content: 67.6

External links

@ref: 19178

culture collection no.: DSM 27241, BCRC 80212, LMG 25724

straininfo link

  • @ref: 87222
  • straininfo: 369492

literature

  • topic: Phylogeny
  • Pubmed-ID: 22140156
  • title: Delftia litopenaei sp. nov., a poly-beta-hydroxybutyrate-accumulating bacterium isolated from a freshwater shrimp culture pond.
  • authors: Chen WM, Lin YS, Sheu DS, Sheu SY
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.037507-0
  • year: 2011
  • mesh: Animals, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Delftia/*classification/genetics/isolation & purification/metabolism, Fatty Acids/analysis, Hydroxybutyrates/*metabolism, Molecular Sequence Data, Penaeidae, *Phylogeny, Polyesters/*metabolism, Ponds/*microbiology, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Taiwan, Water Microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
19178Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 27241)https://www.dsmz.de/collection/catalogue/details/culture/DSM-27241
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30501Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2683428776041
87222Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID369492.1StrainInfo: A central database for resolving microbial strain identifiers