Strain identifier
BacDive ID: 22973
Type strain: 
Species: Acidovorax citrulli
Strain Designation: W1
Strain history: <- S. Burdman, Hebrew Univ. Jerusalem, Israel; W1 <- G. Kritzman, Volcani Center, Israel
NCBI tax ID(s): 80869 (species)
version 8.1 (current version)
General
@ref: 19091
BacDive-ID: 22973
DSM-Number: 26975
keywords: Bacteria, mesophilic, plant pathogen
description: Acidovorax citrulli W1 is a mesophilic plant pathogen that was isolated from leaf of symptomatic watermelon plant.
NCBI tax id
- NCBI tax id: 80869
- Matching level: species
strain history
- @ref: 19091
- history: <- S. Burdman, Hebrew Univ. Jerusalem, Israel; W1 <- G. Kritzman, Volcani Center, Israel
doi: 10.13145/bacdive22973.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Comamonadaceae
- genus: Acidovorax
- species: Acidovorax citrulli
- full scientific name: Acidovorax citrulli (Schaad et al. 1978) Schaad et al. 2009
synonyms
@ref synonym 20215 Pseudomonas avenae subsp. citrulli 20215 Paracidovorax citrulli 20215 Acidovorax avenae subsp. citrulli 20215 Pseudomonas pseudoalcaligenes subsp. citrulli
@ref: 19091
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Comamonadaceae
genus: Acidovorax
species: Acidovorax citrulli
full scientific name: Acidovorax citrulli (Schaad et al. 1978) Schaad et al. 2009
strain designation: W1
type strain: no
Morphology
multimedia
- @ref: 19091
- multimedia content: https://www.dsmz.de/microorganisms/photos/DSM_26975.jpg
- intellectual property rights: © Leibniz-Institut DSMZ
Culture and growth conditions
culture medium
- @ref: 19091
- name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)
- growth: yes
- link: https://mediadive.dsmz.de/medium/1a
- composition: Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
culture temp
- @ref: 19091
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 68369 | 25115 | malate | + | assimilation |
| 68369 | 17128 | adipate | + | assimilation |
| 68369 | 27689 | decanoate | - | assimilation |
| 68369 | 24265 | gluconate | + | assimilation |
| 68369 | 17306 | maltose | - | assimilation |
| 68369 | 59640 | N-acetylglucosamine | - | assimilation |
| 68369 | 16899 | D-mannitol | - | assimilation |
| 68369 | 16024 | D-mannose | - | assimilation |
| 68369 | 30849 | L-arabinose | + | assimilation |
| 68369 | 17634 | D-glucose | + | assimilation |
| 68369 | 5291 | gelatin | - | hydrolysis |
| 68369 | 4853 | esculin | - | hydrolysis |
| 68369 | 16199 | urea | - | hydrolysis |
| 68369 | 29016 | arginine | - | hydrolysis |
| 68369 | 17634 | D-glucose | - | fermentation |
| 68369 | 27897 | tryptophan | - | energy source |
| 68369 | 17632 | nitrate | + | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 68369 | cytochrome oxidase | + | 1.9.3.1 |
| 68369 | gelatinase | - | |
| 68369 | beta-glucosidase | - | 3.2.1.21 |
| 68369 | urease | - | 3.5.1.5 |
| 68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
| @ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 19091 | + | - | - | - | - | - | - | - | + | + | - | - | - | - | + | - | + | + | - | - | + |
Isolation, sampling and environmental information
isolation
- @ref: 19091
- sample type: leaf of symptomatic watermelon plant
- geographic location: Dead Sea region
- country: Israel
- origin.country: ISR
- continent: Asia
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Host | #Plants | #Herbaceous plants (Grass,Crops) |
| #Host Body-Site | #Plant | #Leaf (Phyllosphere) |
Safety information
risk assessment
- @ref: 19091
- pathogenicity plant: yes
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
External links
@ref: 19091
culture collection no.: DSM 26975
straininfo link
- @ref: 87220
- straininfo: 404377
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 19091 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26975) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-26975 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 68369 | Automatically annotated from API 20NE | |||
| 87220 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID404377.1 | StrainInfo: A central database for resolving microbial strain identifiers |