Strain identifier
BacDive ID: 22966
Type strain: 
Species: Acetivibrio thermocellus
Strain Designation: AD2
Strain history: <- R. Lamed, Tel-Aviv Univ., Dept. of Mol. Microbiol. and Biotechnol., Fac. of Life Scs., Israel; AD2 <- R. Lamed {1980}
NCBI tax ID(s): 1515 (species)
version 8.1 (current version)
General
@ref: 18806
BacDive-ID: 22966
DSM-Number: 25992
keywords: genome sequence, Bacteria, anaerobe, thermophilic
description: Acetivibrio thermocellus AD2 is an anaerobe, thermophilic bacterium of the family Oscillospiraceae.
NCBI tax id
- NCBI tax id: 1515
- Matching level: species
strain history
- @ref: 18806
- history: <- R. Lamed, Tel-Aviv Univ., Dept. of Mol. Microbiol. and Biotechnol., Fac. of Life Scs., Israel; AD2 <- R. Lamed {1980}
doi: 10.13145/bacdive22966.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Clostridia
- order: Eubacteriales
- family: Oscillospiraceae
- genus: Acetivibrio
- species: Acetivibrio thermocellus
- full scientific name: Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019
synonyms
@ref synonym 20215 Ruminiclostridium thermocellum 20215 Clostridium thermocellum 20215 Hungateiclostridium thermocellum
@ref: 18806
domain: Bacteria
phylum: Firmicutes
class: Clostridia
order: Clostridiales
family: Oscillospiraceae
genus: Acetivibrio
species: Acetivibrio thermocellus
full scientific name: Acetivibrio thermocellus (Viljoen et al. 1926) Tindall 2019
strain designation: AD2
type strain: no
Culture and growth conditions
culture medium
- @ref: 18806
- name: ACETIVIBRIO MEDIUM (DSMZ Medium 122)
- growth: yes
- link: https://mediadive.dsmz.de/medium/122
- composition: Name: ACETIVIBRIO MEDIUM (DSMZ Medium 122) Composition: Cellulose 10.0 g/l (optional) Na2-ß-glycerophosphate x 5 H2O 6.0 g/l K2HPO4 5.5 g/l Cellobiose 5.0 g/l Yeast extract 4.5 g/l MgCl2 x 6 H2O 2.6 g/l KH2PO4 1.43 g/l (NH4)2SO4 1.3 g/l L-Glutathione 0.25 g/l CaCl2 x 2 H2O 0.13 g/l FeSO4 x 7 H2O 0.0011 g/l Sodium resazurin 0.0005 g/l Distilled water
culture temp
- @ref: 18806
- growth: positive
- type: growth
- temperature: 60
- range: thermophilic
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 18806 | anaerobe |
| 43429 | anaerobe |
observation
- @ref: 43429
- observation: adherance to cellulose after growth on cellobiose medium
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 43429 | 85146 | carboxymethylcellulose | + | degradation |
| 43429 | 62968 | cellulose | + | degradation |
Isolation, sampling and environmental information
isolation
- @ref: 18806
- country: USA
- origin.country: USA
- continent: North America
Safety information
risk assessment
- @ref: 18806
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Acetivibrio thermocellus AD2 | GCA_000255615 | complete | ncbi | 1138384 |
| 66792 | Acetivibrio thermocellus AD2 | GCA_002564085 | contig | ncbi | 1138384 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| motile | yes | 51.884 | no |
| motile | yes | 51.884 | no |
| flagellated | no | 70.969 | no |
| flagellated | no | 70.969 | no |
| gram-positive | yes | 52.059 | no |
| gram-positive | yes | 52.059 | no |
| anaerobic | yes | 99.999 | yes |
| anaerobic | yes | 99.999 | yes |
| aerobic | no | 99.111 | no |
| aerobic | no | 99.111 | no |
| halophile | no | 94.272 | no |
| halophile | no | 94.272 | no |
| spore-forming | yes | 94.781 | no |
| spore-forming | yes | 94.781 | no |
| glucose-util | yes | 84.249 | no |
| glucose-util | yes | 84.249 | no |
| thermophile | yes | 99.681 | yes |
| thermophile | yes | 99.681 | yes |
| glucose-ferment | yes | 57.683 | no |
| glucose-ferment | yes | 57.683 | no |
External links
@ref: 18806
culture collection no.: DSM 25992
straininfo link
- @ref: 87213
- straininfo: 399427
Reference
| @id | authors | catalogue | doi/url | title | journal |
|---|---|---|---|---|---|
| 18806 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25992) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25992 | ||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | ||
| 43429 | Edward A. Bayer, Rina Kenig, Raphael Lamed | http://jb.asm.org/content/156/2/818.full.pdf+html | Adherence of Clostridium thermocellum to Cellulose | J. Bacteriol. 156: 818-827 1983 | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | ||
| 87213 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID399427.1 | StrainInfo: A central database for resolving microbial strain identifiers |