Strain identifier

BacDive ID: 22962

Type strain: Yes

Species: Caloramator quimbayensis

Strain history: <- B. Patel, Griffith Univ., Nathan Campus, Australia; USBA A <- C. Rubiano {2008}

NCBI tax ID(s): 1147123 (species)

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General

@ref: 19304

BacDive-ID: 22962

DSM-Number: 22093

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, spore-forming, thermophilic, Gram-positive, motile, rod-shaped

description: Caloramator quimbayensis DSM 22093 is an anaerobe, spore-forming, thermophilic bacterium that was isolated from water from a terrestrial thermal spring.

NCBI tax id

  • NCBI tax id: 1147123
  • Matching level: species

strain history

  • @ref: 19304
  • history: <- B. Patel, Griffith Univ., Nathan Campus, Australia; USBA A <- C. Rubiano {2008}

doi: 10.13145/bacdive22962.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Clostridia
  • order: Eubacteriales
  • family: Clostridiaceae
  • genus: Caloramator
  • species: Caloramator quimbayensis
  • full scientific name: Caloramator quimbayensis Rubiano-Labrador et al. 2013

@ref: 19304

domain: Bacteria

phylum: Firmicutes

class: Clostridia

order: Clostridiales

family: Clostridiaceae

genus: Caloramator

species: Caloramator quimbayensis

full scientific name: Caloramator quimbayensis Rubiano-Labrador et al. 2013

type strain: yes

Morphology

cell morphology

  • @ref: 30521
  • gram stain: positive
  • cell length: 2.5 µm
  • cell width: 0.9 µm
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

  • @ref: 19304
  • name: CALORAMATOR QUIMBAYENSIS MEDIUM (DSMZ Medium 1477)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/1477
  • composition: Name: CALORAMATOR QUIMBAYENSIS MEDIUM (DSMZ Medium 1477) Composition: D-Glucose 3.59281 g/l MgCl2 x 6 H2O 1.49701 g/l Yeast extract 0.998004 g/l NH4Cl 0.998004 g/l NaHCO3 0.499002 g/l K2HPO4 0.299401 g/l KH2PO4 0.299401 g/l KCl 0.0998004 g/l Nitrilotriacetic acid 0.0127745 g/l FeCl2 x 4 H2O 0.000998004 g/l NaCl 0.000998004 g/l Sodium resazurin 0.000499002 g/l MnCl2 x 4 H2O 9.98004e-05 g/l NiCl2 x 6 H2O 9.98004e-05 g/l CaCl2 x 2 H2O 9.98004e-05 g/l ZnCl2 9.98004e-05 g/l Pyridoxine hydrochloride 9.98004e-05 g/l p-Aminobenzoic acid 4.99002e-05 g/l Calcium D-(+)-pantothenate 4.99002e-05 g/l Nicotinic acid 4.99002e-05 g/l (DL)-alpha-Lipoic acid 4.99002e-05 g/l Riboflavin 4.99002e-05 g/l Thiamine HCl 4.99002e-05 g/l Na2WO4 x 2 H2O 3.99202e-05 g/l CoCl2 x 6 H2O 2.99401e-05 g/l Na2MoO4 x 2 H2O 2.99401e-05 g/l Na2SeO3 x 5 H2O 2.99401e-05 g/l Folic acid 1.99601e-05 g/l Biotin 1.99601e-05 g/l CuCl2 1.99601e-05 g/l H3BO3 9.98004e-06 g/l Vitamin B12 9.98004e-07 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
19304positivegrowth55thermophilic
30521positivegrowth37-55
30521positiveoptimum50thermophilic

culture pH

@refabilitytypepH
30521positivegrowth06-08
30521positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
19304anaerobe
30521anaerobe

spore formation

  • @ref: 30521
  • spore formation: yes

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3052116449alanine+carbon source
3052122599arabinose+carbon source
3052129016arginine+carbon source
3052123652dextrin+carbon source
3052128757fructose+carbon source
3052117234glucose+carbon source
3052129987glutamate+carbon source
3052117306maltose+carbon source
3052129864mannitol+carbon source
3052137684mannose+carbon source
3052117272propionate+carbon source
3052133942ribose+carbon source
3052117992sucrose+carbon source

metabolite production

  • @ref: 30521
  • Chebi-ID: 16136
  • metabolite: hydrogen sulfide
  • production: yes

Isolation, sampling and environmental information

isolation

  • @ref: 19304
  • sample type: water from a terrestrial thermal spring
  • geographic location: Risaralda, Parador de Quimbaya hot spring
  • country: Colombia
  • origin.country: COL
  • continent: Middle and South America

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Thermal spring
#Environmental#Terrestrial
#Condition#Thermophilic (>45°C)

taxonmaps

  • @ref: 69479
  • File name: preview.99_157986.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_285;96_1118;97_1311;98_1577;99_157986&stattab=map
  • Last taxonomy: Caloramator quimbayensis subclade
  • 16S sequence: JN648101
  • Sequence Identity:
  • Total samples: 4
  • aquatic counts: 4

Safety information

risk assessment

  • @ref: 19304
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 19304
  • description: Caloramator quimbayensis strain USBA A 16S ribosomal RNA gene, partial sequence
  • accession: JN648101
  • length: 1517
  • database: ena
  • NCBI tax ID: 1147123

Genome sequences

  • @ref: 66792
  • description: Caloramator quimbayensis USBA 833, DSM 22093
  • accession: 2671180028
  • assembly level: draft
  • database: img
  • NCBI tax ID: 1147123

GC content

@refGC-contentmethod
1930432.6high performance liquid chromatography (HPLC)
3052132.6

External links

@ref: 19304

culture collection no.: DSM 22093, CMPUJ U833, USBA A

straininfo link

  • @ref: 87209
  • straininfo: 407502

literature

  • topic: Phylogeny
  • Pubmed-ID: 22843719
  • title: Caloramator quimbayensis sp. nov., an anaerobic, moderately thermophilic bacterium isolated from a terrestrial hot spring.
  • authors: Rubiano-Labrador C, Baena S, Diaz-Cardenas C, Patel BKC
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.037937-0
  • year: 2012
  • mesh: Bacteria, Anaerobic/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, Colombia, DNA, Bacterial/genetics, Fatty Acids/analysis, Fermentation, Gram-Positive Bacteria/*classification/genetics/isolation & purification, Hot Springs/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Water Microbiology
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmedjournal
19304Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22093)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22093
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30521Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2685328776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updates33211880Nucleic Acids Res. 49: D498-D508 2020
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
87209Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID407502.1StrainInfo: A central database for resolving microbial strain identifiers