Strain identifier
BacDive ID: 22956
Type strain:
Species: Paraoerskovia sediminicola
Strain Designation: H25-14
Strain history: <- M. Hamada, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Kisarazu, Japan; H25-14
NCBI tax ID(s): 1138587 (species)
General
@ref: 19371
BacDive-ID: 22956
DSM-Number: 25477
keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, coccus-shaped
description: Paraoerskovia sediminicola H25-14 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from marine sediment.
NCBI tax id
- NCBI tax id: 1138587
- Matching level: species
strain history
- @ref: 19371
- history: <- M. Hamada, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Kisarazu, Japan; H25-14
doi: 10.13145/bacdive22956.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/actinomycetota
- domain: Bacteria
- phylum: Actinomycetota
- class: Actinomycetes
- order: Micrococcales
- family: Promicromonosporaceae
- genus: Paraoerskovia
- species: Paraoerskovia sediminicola
- full scientific name: Paraoerskovia sediminicola Hamada et al. 2013
@ref: 19371
domain: Bacteria
phylum: Actinobacteria
class: Actinobacteria
order: Actinomycetales
family: Promicromonosporaceae
genus: Paraoerskovia
species: Paraoerskovia sediminicola
full scientific name: Paraoerskovia sediminicola Hamada et al. 2013
strain designation: H25-14
type strain: yes
Morphology
cell morphology
- @ref: 30759
- gram stain: positive
- cell length: 0.55 µm
- cell width: 0.55 µm
- cell shape: coccus-shaped
- motility: no
pigmentation
- @ref: 30759
- production: yes
Culture and growth conditions
culture medium
- @ref: 19371
- name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
- growth: yes
- link: https://mediadive.dsmz.de/medium/92
- composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
19371 | positive | growth | 28 | mesophilic |
30759 | positive | growth | 10-30 | |
30759 | positive | optimum | 28 | mesophilic |
culture pH
@ref | ability | type | pH | PH range |
---|---|---|---|---|
30759 | positive | growth | 6.0-10.0 | alkaliphile |
30759 | positive | optimum | 7 |
Physiology and metabolism
oxygen tolerance
- @ref: 30759
- oxygen tolerance: facultative anaerobe
spore formation
- @ref: 30759
- spore formation: no
halophily
- @ref: 30759
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-10 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
30759 | 22599 | arabinose | + | carbon source |
30759 | 17057 | cellobiose | + | carbon source |
30759 | 28757 | fructose | + | carbon source |
30759 | 28260 | galactose | + | carbon source |
30759 | 24265 | gluconate | + | carbon source |
30759 | 17234 | glucose | + | carbon source |
30759 | 17754 | glycerol | + | carbon source |
30759 | 28087 | glycogen | + | carbon source |
30759 | 17716 | lactose | + | carbon source |
30759 | 17306 | maltose | + | carbon source |
30759 | 37684 | mannose | + | carbon source |
30759 | 28053 | melibiose | + | carbon source |
30759 | 506227 | N-acetylglucosamine | + | carbon source |
30759 | 33942 | ribose | + | carbon source |
30759 | 17814 | salicin | + | carbon source |
30759 | 17992 | sucrose | + | carbon source |
30759 | 27082 | trehalose | + | carbon source |
30759 | 18222 | xylose | + | carbon source |
30759 | 4853 | esculin | + | hydrolysis |
30759 | 17632 | nitrate | + | reduction |
enzymes
@ref | value | activity | ec |
---|---|---|---|
30759 | acid phosphatase | + | 3.1.3.2 |
30759 | catalase | + | 1.11.1.6 |
30759 | pyrazinamidase | + | 3.5.1.B15 |
Isolation, sampling and environmental information
isolation
- @ref: 19371
- sample type: marine sediment
- geographic location: Chiba, Kamogawa beach
- country: Japan
- origin.country: JPN
- continent: Asia
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Aquatic | #Marine |
#Environmental | #Aquatic | #Sediment |
taxonmaps
- @ref: 69479
- File name: preview.99_37892.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_3247;97_3985;98_5086;99_37892&stattab=map
- Last taxonomy: Paraoerskovia sediminicola
- 16S sequence: AB695378
- Sequence Identity:
- Total samples: 30
- soil counts: 10
- aquatic counts: 3
- animal counts: 3
- plant counts: 14
Safety information
risk assessment
- @ref: 19371
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 19371
- description: Paraoerskovia sediminicola gene for 16S rRNA, partial sequence
- accession: AB695378
- length: 1477
- database: ena
- NCBI tax ID: 1138587
GC content
@ref | GC-content | method |
---|---|---|
19371 | 73.2 | high performance liquid chromatography (HPLC) |
30759 | 73.2 |
External links
@ref: 19371
culture collection no.: DSM 25477, NBRC 108565
straininfo link
- @ref: 87204
- straininfo: 396808
literature
- topic: Phylogeny
- Pubmed-ID: 23291891
- title: Paraoerskovia sediminicola sp. nov., an actinobacterium isolated from sea sediment, and emended description of the genus Paraoerskovia.
- authors: Hamada M, Tamura T, Shibata C, Yamamura H, Hayakawa M, Schumann P, Suzuki KI
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.043745-0
- year: 2013
- mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
---|---|---|---|---|---|---|
19371 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25477) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-25477 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
30759 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 27090 | 28776041 | |
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
87204 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID396808.1 | StrainInfo: A central database for resolving microbial strain identifiers |