Strain identifier

BacDive ID: 22956

Type strain: Yes

Species: Paraoerskovia sediminicola

Strain Designation: H25-14

Strain history: <- M. Hamada, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Kisarazu, Japan; H25-14

NCBI tax ID(s): 1138587 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 19371

BacDive-ID: 22956

DSM-Number: 25477

keywords: 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, coccus-shaped

description: Paraoerskovia sediminicola H25-14 is a facultative anaerobe, mesophilic, Gram-positive bacterium that was isolated from marine sediment.

NCBI tax id

  • NCBI tax id: 1138587
  • Matching level: species

strain history

  • @ref: 19371
  • history: <- M. Hamada, NBRC, NITE (Natl. Inst. of Technol. and Evaluation), Kisarazu, Japan; H25-14

doi: 10.13145/bacdive22956.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Promicromonosporaceae
  • genus: Paraoerskovia
  • species: Paraoerskovia sediminicola
  • full scientific name: Paraoerskovia sediminicola Hamada et al. 2013

@ref: 19371

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Promicromonosporaceae

genus: Paraoerskovia

species: Paraoerskovia sediminicola

full scientific name: Paraoerskovia sediminicola Hamada et al. 2013

strain designation: H25-14

type strain: yes

Morphology

cell morphology

  • @ref: 30759
  • gram stain: positive
  • cell length: 0.55 µm
  • cell width: 0.55 µm
  • cell shape: coccus-shaped
  • motility: no

pigmentation

  • @ref: 30759
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 19371
  • name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/92
  • composition: Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
19371positivegrowth28mesophilic
30759positivegrowth10-30
30759positiveoptimum28mesophilic

culture pH

@refabilitytypepHPH range
30759positivegrowth6.0-10.0alkaliphile
30759positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30759
  • oxygen tolerance: facultative anaerobe

spore formation

  • @ref: 30759
  • spore formation: no

halophily

  • @ref: 30759
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 0-10 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3075922599arabinose+carbon source
3075917057cellobiose+carbon source
3075928757fructose+carbon source
3075928260galactose+carbon source
3075924265gluconate+carbon source
3075917234glucose+carbon source
3075917754glycerol+carbon source
3075928087glycogen+carbon source
3075917716lactose+carbon source
3075917306maltose+carbon source
3075937684mannose+carbon source
3075928053melibiose+carbon source
30759506227N-acetylglucosamine+carbon source
3075933942ribose+carbon source
3075917814salicin+carbon source
3075917992sucrose+carbon source
3075927082trehalose+carbon source
3075918222xylose+carbon source
307594853esculin+hydrolysis
3075917632nitrate+reduction

enzymes

@refvalueactivityec
30759acid phosphatase+3.1.3.2
30759catalase+1.11.1.6
30759pyrazinamidase+3.5.1.B15

Isolation, sampling and environmental information

isolation

  • @ref: 19371
  • sample type: marine sediment
  • geographic location: Chiba, Kamogawa beach
  • country: Japan
  • origin.country: JPN
  • continent: Asia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Aquatic#Sediment

taxonmaps

  • @ref: 69479
  • File name: preview.99_37892.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_9;96_3247;97_3985;98_5086;99_37892&stattab=map
  • Last taxonomy: Paraoerskovia sediminicola
  • 16S sequence: AB695378
  • Sequence Identity:
  • Total samples: 30
  • soil counts: 10
  • aquatic counts: 3
  • animal counts: 3
  • plant counts: 14

Safety information

risk assessment

  • @ref: 19371
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 19371
  • description: Paraoerskovia sediminicola gene for 16S rRNA, partial sequence
  • accession: AB695378
  • length: 1477
  • database: ena
  • NCBI tax ID: 1138587

GC content

@refGC-contentmethod
1937173.2high performance liquid chromatography (HPLC)
3075973.2

External links

@ref: 19371

culture collection no.: DSM 25477, NBRC 108565

straininfo link

  • @ref: 87204
  • straininfo: 396808

literature

  • topic: Phylogeny
  • Pubmed-ID: 23291891
  • title: Paraoerskovia sediminicola sp. nov., an actinobacterium isolated from sea sediment, and emended description of the genus Paraoerskovia.
  • authors: Hamada M, Tamura T, Shibata C, Yamamura H, Hayakawa M, Schumann P, Suzuki KI
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.043745-0
  • year: 2013
  • mesh: Actinomycetales/*classification/genetics/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/analysis, Geologic Sediments/*microbiology, Japan, Molecular Sequence Data, Nucleic Acid Hybridization, Peptidoglycan/analysis, *Phylogeny, RNA, Ribosomal, 16S/genetics, Seawater/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
19371Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25477)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25477
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30759Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2709028776041
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
87204Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID396808.1StrainInfo: A central database for resolving microbial strain identifiers