Strain identifier

BacDive ID: 2295

Type strain: Yes

Species: Asticcacaulis excentricus

Strain history: CIP <- 2001, W.R. Abraham, GBF, Braunschweig, Germany <- DSMZ <- ATCC <- J.L. Stove: strain CB 48 (AC48)

NCBI tax ID(s): 573065 (strain), 78587 (species)

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General

@ref: 1730

BacDive-ID: 2295

DSM-Number: 4724

keywords: 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, rod-shaped

description: Asticcacaulis excentricus DSM 4724 is an obligate aerobe, mesophilic, Gram-negative bacterium that was isolated from pond water.

NCBI tax id

NCBI tax idMatching level
78587species
573065strain

strain history

@refhistory
1730<- ATCC <- J.L. Stove, CB 48 (AC 48)
119151CIP <- 2001, W.R. Abraham, GBF, Braunschweig, Germany <- DSMZ <- ATCC <- J.L. Stove: strain CB 48 (AC48)

doi: 10.13145/bacdive2295.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Caulobacterales
  • family: Caulobacteraceae
  • genus: Asticcacaulis
  • species: Asticcacaulis excentricus
  • full scientific name: Asticcacaulis excentricus Poindexter 1964 (Approved Lists 1980)

@ref: 1730

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Caulobacteraceae

genus: Asticcacaulis

species: Asticcacaulis excentricus

full scientific name: Asticcacaulis excentricus Poindexter 1964

type strain: yes

Morphology

cell morphology

  • @ref: 119151
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

pigmentation

  • @ref: 119151
  • production: no
  • name: Pyocyanin

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1730CAULOBACTER MEDIUM (DSMZ Medium 595)yeshttps://mediadive.dsmz.de/medium/595Name: CAULOBACTER MEDIUM (DSMZ Medium 595) Composition: Agar 15.0 g/l Bacto peptone 2.0 g/l Yeast extract 1.0 g/l MgSO4 x 7 H2O 0.2 g/l Tap water
39648MEDIUM 374 - for Rhodopseudomonas rhenobacensisyesDistilled water make up to (944.500 ml);Agar (20.000 g);Yeast extract (1.000 ml);Solution A - M00720 (40.000 ml);Solution B - M00721 (10.000 ml);Solution C - M00722 (2.000 ml);Solution D - M00723 (1.000 ml);Solution E - M00724 (1.500 ml);Solution trace el
119151CIP Medium 374yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=374

culture temp

@refgrowthtypetemperaturerange
1730positivegrowth30mesophilic
39648positivegrowth30mesophilic
119151positivegrowth25-37mesophilic
119151nogrowth10psychrophilic
119151nogrowth41thermophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119151
  • oxygen tolerance: obligate aerobe

halophily

@refsaltgrowthtested relationconcentration
119151NaClpositivegrowth0-2 %
119151NaClnogrowth4 %
119151NaClnogrowth6 %
119151NaClnogrowth8 %
119151NaClnogrowth10 %

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate-builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose+builds acid from18287
68371D-fucose+builds acid from28847
68371D-tagatose-builds acid from16443
68371turanose-builds acid from32528
68371gentiobiose+builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371raffinose+builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose+builds acid from17992
68371melibiose+builds acid from28053
68371lactose+builds acid from17716
68371maltose+builds acid from17306
68371cellobiose+builds acid from17057
68371salicin-builds acid from17814
68371esculin+builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine-builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose-builds acid from16988
68371L-arabinose+builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
119151citrate-carbon source16947
119151esculin+hydrolysis4853
119151nitrate-reduction17632
119151nitrite-reduction16301
119151nitrate-respiration17632

antibiotic resistance

  • @ref: 119151
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: no
  • is resistant: yes

metabolite production

  • @ref: 119151
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin+3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
119151oxidase+
119151beta-galactosidase+3.2.1.23
119151alcohol dehydrogenase-1.1.1.1
119151gelatinase-
119151amylase-
119151DNase-
119151caseinase-3.4.21.50
119151catalase+1.11.1.6
119151tween esterase+
119151lecithinase-
119151lipase-
119151lysine decarboxylase-4.1.1.18
119151ornithine decarboxylase-4.1.1.17
119151protease-
119151tryptophan deaminase-
119151urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119151-+++-+--+-++++--++--

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119151---+-+---+++/-+/--+---------+-+++++---++/---+-+/--++-----

API biotype100

@refGLUFRUGALTREMNESBEMELSACRAFMTEMALLACLTEMbGaMaGaCELGENMbGuESCRIBARAXYLPLERHAFUCMLZDARLLARLXLTDULTAGGLYINOMANMTLTURSORADOHBGLYXERYMDG3MDGSATMUCLTATDTATMTATDMLTLMLTCATETATETTECITGRTGAT2KG5KGTRYNAGGNTPACPATpOBEQATGTEmOBEBATPPATCMTTGEBETPCEABTHINLATCAPCYTHISSUCFUMGREGYTAVTETNTTNGLNITA3OBUAPTGTTPRODALALALASERMNTPROPTYR2KT
119151------------+-----+--------------------------------------------------------------------------------

Isolation, sampling and environmental information

isolation

@refsample typeisolation date
1730pond water
119151Environment, Freshwater aquarium1964

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #Pond (small)

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
17301Risk group (German classification)
1191511Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Asticcacaulis excentricus 16S rRNA gene, partial sequenceAB0166101426ena573065
20218Asticcacaulis excentricus 16S ribosomal RNA gene, partial sequenceAF1154991282ena573065
20218Asticcacaulis excentricus 16S rRNA geneAJ0078001416ena573065
20218Asticcacaulis excentricus partial 16S rRNA gene for 16S ribosomal RNA, strain DSM 4724(T)AJ2471941416ena573065

External links

@ref: 1730

culture collection no.: DSM 4724, ATCC 15261, CB 48, CIP 107064, CB 48 (AC48)

straininfo link

  • @ref: 71853
  • straininfo: 21290

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny15879262Asticcacaulis taihuensis sp. nov., a novel stalked bacterium isolated from Taihu Lake, China.Liu ZP, Wang BJ, Liu SJ, Liu YHInt J Syst Evol Microbiol10.1099/ijs.0.63334-02005Bacterial Typing Techniques, Base Composition, Caulobacteraceae/*classification/cytology/*isolation & purification/physiology, China, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Fatty Acids/analysis/isolation & purification, Fresh Water/*microbiology, Genes, Bacterial, Genes, rRNA, Geologic Sediments/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Water MicrobiologyEnzymology
Phylogeny31778348Asticcacaulis tiandongensis sp. nov., a new member of the genus Asticcacaulis, isolated from a cave soil sample.Zhou XK, Huang Y, Li M, Zhang XF, Wei YQ, Qin SC, Zhang TK, Wang XJ, Liu JJ, Wang L, Liu ZY, Mo MHInt J Syst Evol Microbiol10.1099/ijsem.0.0038182020Bacterial Typing Techniques, Base Composition, Caulobacteraceae/*classification/isolation & purification, Caves/*microbiology, China, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nucleic Acid Hybridization, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1730Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 4724)https://www.dsmz.de/collection/catalogue/details/culture/DSM-4724
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39648Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/19263
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
71853Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID21290.1StrainInfo: A central database for resolving microbial strain identifiers
119151Curators of the CIPCollection of Institut Pasteur (CIP 107064)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20107064