Strain identifier

BacDive ID: 22937

Type strain: Yes

Species: Brevibacterium siliguriense

Strain Designation: MB18

Strain history: LMG 25772 <-- R. Chakraborty and A. Kumar; Dept. of Biotechnol., Univ. of North Bengal, India; MB18.

NCBI tax ID(s): 1136497 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 19217

BacDive-ID: 22937

DSM-Number: 23676

keywords: genome sequence, 16S sequence, Bacteria, aerobe, Gram-positive, rod-shaped

description: Brevibacterium siliguriense MB18 is an aerobe, Gram-positive, rod-shaped bacterium that was isolated from River water.

NCBI tax id

  • NCBI tax id: 1136497
  • Matching level: species

strain history

@refhistory
19217<- A. Kumar, University of North Bengal, Dept. of Biotechnology; MB 18
67770LMG 25772 <-- R. Chakraborty and A. Kumar; Dept. of Biotechnol., Univ. of North Bengal, India; MB18.

doi: 10.13145/bacdive22937.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Micrococcales
  • family: Brevibacteriaceae
  • genus: Brevibacterium
  • species: Brevibacterium siliguriense
  • full scientific name: Brevibacterium siliguriense Kumar et al. 2013

@ref: 19217

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Brevibacteriaceae

genus: Brevibacterium

species: Brevibacterium siliguriense

full scientific name: Brevibacterium siliguriense Kumar et al. 2013

strain designation: MB18

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityconfidence
30536positive2 µm0.4 µmrod-shapedno
69480positive100

Culture and growth conditions

culture temp

@refgrowthtypetemperaturerange
30536positivegrowth20-37
30536positiveoptimum28mesophilic
67770positivegrowth28mesophilic

culture pH

@refabilitytypepHPH range
30536positivegrowth05-12alkaliphile
30536positiveoptimum7

Physiology and metabolism

oxygen tolerance

  • @ref: 30536
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
30536no
69481no100
69480no99.979

halophily

@refsaltgrowthtested relationconcentration
30536NaClpositivegrowth0-15 %
30536NaClpositiveoptimum2 %

observation

  • @ref: 67770
  • observation: quinones: MK-8(H2)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3053616449alanine+carbon source
3053629016arginine+carbon source
3053625017leucine+carbon source
3053626271proline+carbon source
3053617632nitrate+reduction

enzymes

@refvalueactivityec
30536alpha-galactosidase+3.2.1.22
30536gelatinase+
30536urease+3.5.1.5

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
19217River waterWest Bengal, River Mahananda at Siliguri (26°44'23.20"N, 88°25'22.89"E)IndiaINDAsia26.739888.423
67770Water sample from Mahananda RiverSiliguri, Darjeeling District, West BengalIndiaINDAsia

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Aquatic
  • Cat3: #River (Creek)

Safety information

risk assessment

  • @ref: 19217
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
19217Brevibacterium siliguriense partial 16S rRNA gene, type strain MB18TAM9372471433ena1136497
67770Brevibacterium siliguriense gene for 16S ribosomal RNA, partial sequence, strain: JCM 30994LC0821011464ena1136497

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Brevibacterium siliguriense DSM 23676GCA_900105315chromosomencbi1136497
66792Brevibacterium siliguriense strain DSM 236761136497.4completepatric1136497
66792Brevibacterium siliguriense DSM 236762634166531draftimg1136497

GC content

@refGC-contentmethod
1921764.6high performance liquid chromatography (HPLC)
3053664.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno93.271no
flagellatedno97.325yes
gram-positiveyes89.546yes
anaerobicno99.524yes
aerobicyes95.974no
halophileyes75.912no
spore-formingno91.992no
glucose-utilyes89.513no
thermophileno98.639yes
glucose-fermentno91.996no

External links

@ref: 19217

culture collection no.: DSM 23676, LMG 25772, JCM 30994

straininfo link

  • @ref: 87185
  • straininfo: 369732

literature

  • topic: Phylogeny
  • Pubmed-ID: 22523163
  • title: Brevibacterium siliguriense sp. nov., a facultatively oligotrophic bacterium isolated from river water.
  • authors: Kumar A, Ince IA, Kati A, Chakraborty R
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.038281-0
  • year: 2012
  • mesh: Amino Acids, Diamino/analysis, Bacterial Typing Techniques, Base Composition, Brevibacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, India, Molecular Sequence Data, *Phylogeny, RNA, Ribosomal, 16S/genetics, Rivers/*microbiology, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/analysis
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
19217Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23676)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23676
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30536Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2686728776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
87185Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID369732.1StrainInfo: A central database for resolving microbial strain identifiers