Strain identifier

BacDive ID: 22904

Type strain: Yes

Species: Castellaniella hirudinis

Strain Designation: E103

Strain history: CIP <- 2012, P. Kämpfer, Giessen Univ., Giessen, Germany: strain E103 <- 2009, L. Kaiser

NCBI tax ID(s): 1144617 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 19219

BacDive-ID: 22904

DSM-Number: 25756

keywords: 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Castellaniella hirudinis E103 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from skin of a juvenile medical leech .

NCBI tax id

  • NCBI tax id: 1144617
  • Matching level: species

strain history

@refhistory
19219<- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; E103 <- L. Kaiser
119913CIP <- 2012, P. Kämpfer, Giessen Univ., Giessen, Germany: strain E103 <- 2009, L. Kaiser

doi: 10.13145/bacdive22904.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Alcaligenaceae
  • genus: Castellaniella
  • species: Castellaniella hirudinis
  • full scientific name: Castellaniella hirudinis Glaeser et al. 2013

@ref: 19219

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Alcaligenaceae

genus: Castellaniella

species: Castellaniella hirudinis

full scientific name: Castellaniella hirudinis Glaeser et al. 2013

strain designation: E103

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotility
30662negative1 µm0.5 µmrod-shapedyes
119913negativerod-shapedyes

pigmentation

  • @ref: 30662
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthcompositionlink
32803MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
19219NUTRIENT AGAR (DSMZ Medium 1)yesName: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled waterhttps://mediadive.dsmz.de/medium/1
119913CIP Medium 566yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566
119913CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
19219positivegrowth28mesophilic
30662positivegrowth15-37
30662positiveoptimum27.5mesophilic
32803positivegrowth25mesophilic
62825positivegrowth30mesophilic

culture pH

@refabilitytypepHPH range
30662positivegrowth5.5-11alkaliphile
30662positiveoptimum8.25

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
30662anaerobe
62825aerobe
119913obligate aerobe

spore formation

  • @ref: 30662
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
30662370543-hydroxybutyrate+carbon source
3066230089acetate+carbon source
3066216449alanine+carbon source
3066222599arabinose+carbon source
3066235391aspartate+carbon source
3066217057cellobiose+carbon source
3066216947citrate+carbon source
3066228757fructose+carbon source
3066228260galactose+carbon source
3066224265gluconate+carbon source
3066217234glucose+carbon source
3066224996lactate+carbon source
3066225017leucine+carbon source
3066225115malate+carbon source
3066217306maltose+carbon source
3066237684mannose+carbon source
30662506227N-acetylglucosamine+carbon source
3066218257ornithine+carbon source
3066226271proline+carbon source
3066217272propionate+carbon source
3066215361pyruvate+carbon source
3066217822serine+carbon source
3066217992sucrose+carbon source
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
11991317632nitrate+reduction
11991316301nitrite+reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11991335581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
30662catalase+1.11.1.6
30662cytochrome oxidase+1.9.3.1
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
119913oxidase+
119913catalase+1.11.1.6
119913urease-3.5.1.5
68382alkaline phosphatase-3.1.3.1
68382esterase (C 4)+
68382esterase lipase (C 8)-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382valine arylamidase-
68382cystine arylamidase-3.4.11.3
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382acid phosphatase-3.1.3.2
68382naphthol-AS-BI-phosphohydrolase+
68382alpha-galactosidase-3.2.1.22
68382beta-galactosidase-3.2.1.23
68382beta-glucuronidase-3.2.1.31
68382alpha-glucosidase-3.2.1.20
68382beta-glucosidase-3.2.1.21
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-mannosidase-3.2.1.24
68382alpha-fucosidase-3.2.1.51

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119913--+--+-----+--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
19219+-------------++-++++

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcountryorigin.countrycontinentisolation date
19219skin of a juvenile medical leech (Hirudo verbana)Hirudo verbanaHessen, BiebertalGermanyDEUEurope
62825Surface,juvenile leechBiebertal (Hessen)GermanyDEUEurope
119913Animal, From the surface of a juvenile leechBiebertal, HessenGermanyDEUEurope2009

isolation source categories

Cat1Cat2Cat3
#Host#Invertebrates (Other)#Annelida
#Host Body-Site#Organ#Skin, Nail, Hair

taxonmaps

  • @ref: 69479
  • File name: preview.99_56092.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_7;96_739;97_862;98_15320;99_56092&stattab=map
  • Last taxonomy: Castellaniella
  • 16S sequence: JQ319891
  • Sequence Identity:
  • Total samples: 1905
  • soil counts: 445
  • aquatic counts: 938
  • animal counts: 391
  • plant counts: 131

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
192191Risk group (German classification)
1199131Risk group (French classification)

Sequence information

16S sequences

  • @ref: 19219
  • description: Castellaniella hirudinis strain E103 16S ribosomal RNA gene, partial sequence
  • accession: JQ319891
  • length: 1368
  • database: ena
  • NCBI tax ID: 1144617

External links

@ref: 19219

culture collection no.: DSM 25756, CCUG 62394, LMG 26910, CIP 110374

straininfo link

  • @ref: 87152
  • straininfo: 400990

literature

  • topic: Phylogeny
  • Pubmed-ID: 22523161
  • title: Castellaniella hirudinis sp. nov., isolated from the skin of Hirudo verbana.
  • authors: Glaeser SP, Galatis H, Martin K, Kampfer P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.041392-0
  • year: 2012
  • mesh: Alcaligenaceae/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, DNA, Bacterial/genetics, Fatty Acids/analysis, Leeches/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Putrescine/analogs & derivatives/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Ubiquinone/analysis
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
19219Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 25756)https://www.dsmz.de/collection/catalogue/details/culture/DSM-25756
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
30662Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2699328776041
32803Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/8226
62825Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 62394)https://www.ccug.se/strain?id=62394
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
87152Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID400990.1StrainInfo: A central database for resolving microbial strain identifiers
119913Curators of the CIPCollection of Institut Pasteur (CIP 110374)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110374