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Strain identifier

BacDive ID: 2276

Type strain: Yes

Species: Granulicatella balaenopterae

Strain Designation: M1975/96/1

Strain history: <- CCUG <- M. D. Collins <- G. Foster

NCBI tax ID(s): 137733 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6039

BacDive-ID: 2276

DSM-Number: 15827

keywords: anaerobe, Bacteria, 16S sequence, genome sequence, mesophilic, animal pathogen

description: Granulicatella balaenopterae M1975/96/1 is an anaerobe, mesophilic animal pathogen that was isolated from minke whale .

NCBI tax id

  • NCBI tax id: 137733
  • Matching level: species

strain history: <- CCUG <- M. D. Collins <- G. Foster

doi: 10.13145/bacdive2276.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Carnobacteriaceae
  • genus: Granulicatella
  • species: Granulicatella balaenopterae
  • full scientific name: Granulicatella balaenopterae (Lawson et al. 1999) Collins and Lawson 2000
  • synonyms

    • @ref: 20215
    • synonym: Abiotrophia balaenopterae

@ref: 6039

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Carnobacteriaceae

genus: Granulicatella

species: Granulicatella balaenopterae

full scientific name: Granulicatella balaenopterae (Lawson et al. 1999) Collins and Lawson 2000

strain designation: M1975/96/1

type strain: yes

Morphology

colony morphology

  • @ref: 53634
  • incubation period: 2 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6039PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://bacmedia.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
6039CHOCOLATE AGAR (DSMZ Medium 429b)yeshttps://bacmedia.dsmz.de/medium/429bName: CHOCOLATE AGAR (DSMZ Medium 429b) Composition: Horse blood 100.0 g/l Sheep blood 100.0 g/l Columbia agar base
40244MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)

culture temp

@refgrowthtypetemperaturerange
6039positivegrowth37mesophilic
40244positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
6039anaerobe
6039microaerophile
53634microaerophile

Isolation, sampling and environmental information

isolation

@refsample typehost speciesgeographic locationcontinentcountryorigin.country
6039minke whale (Balaenoptera acutorostrata)Balaenoptera acutorostrataNorth west coastEurope
53634Minke whale (Balaenoptera acutorostrata)EuropeUnited KingdomGBR

isolation source categories

  • Cat1: #Host
  • Cat2: #Mammals
  • Cat3: #Aquatic mammal

Safety information

risk assessment

  • @ref: 6039
  • pathogenicity animal: yes, in single cases
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Granulicatella balaenopterae strain CCUG 37380 clone 1 16S-23S ribosomal RNA intergenic spacer, partial sequenceDQ204534208ena137733
20218Granulicatella balaenopterae strain CCUG 37380 16S-23S ribosomal RNA intergenic spacer, complete sequenceJQ012776204ena137733
6039Granulicatella balaenopterae 16S rRNA gene, strain CCUG 37380Y165471383ena137733

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Granulicatella balaenopterae DSM 15827GCA_900111135scaffoldncbi137733
66792Granulicatella balaenopterae strain DSM 15827137733.3wgspatric137733
66792Granulicatella balaenopterae DSM 158272684622850draftimg137733

GC content

  • @ref: 6039
  • GC-content: 37

External links

@ref: 6039

culture collection no.: DSM 15827, ATCC 700813, CCUG 37380, CIP 105938

straininfo link

@refpassport
20218http://www.straininfo.net/strains/379525
20218http://www.straininfo.net/strains/125543
20218http://www.straininfo.net/strains/125544
20218http://www.straininfo.net/strains/125545

literature

  • topic: Phylogeny
  • Pubmed-ID: 10319470
  • title: Abiotrophia balaenopterae sp. nov., isolated from the minke whale (Balaenoptera acutorostrata).
  • authors: Lawson PA, Foster G, Falsen E, Sjoden B, Collins MD
  • journal: Int J Syst Bacteriol
  • DOI: 10.1099/00207713-49-2-503
  • year: 1999
  • mesh: Animals, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Streptococcaceae/*classification/cytology/*genetics/isolation & purification, Whales/*microbiology
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6039Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 15827)https://www.dsmz.de/collection/catalogue/details/culture/DSM-15827
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40244Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18013
53634Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 37380)https://www.ccug.se/strain?id=37380
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880