Strain identifier
BacDive ID: 227
Type strain:
Species: Aerococcus suis
Strain Designation: 1821/02
Strain history: CIP <- 2007, CECT <- 2006, A.I. Vela, Complutense Univ., Madrid, Spain: strain 1821/02
NCBI tax ID(s): 371602 (species)
General
@ref: 15679
BacDive-ID: 227
DSM-Number: 21500
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped, colony-forming, animal pathogen
description: Aerococcus suis 1821/02 is a microaerophile, mesophilic, Gram-positive animal pathogen that forms circular colonies and was isolated from swine brain, meningitis.
NCBI tax id
- NCBI tax id: 371602
- Matching level: species
strain history
@ref | history |
---|---|
15679 | <- CCUG <- A. I. Vela, Univ. Complutense Madrid <- N. García |
67770 | CECT 7139 <-- A. I. Vela 1821/02. |
123377 | CIP <- 2007, CECT <- 2006, A.I. Vela, Complutense Univ., Madrid, Spain: strain 1821/02 |
doi: 10.13145/bacdive227.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Aerococcaceae
- genus: Aerococcus
- species: Aerococcus suis
- full scientific name: Aerococcus suis Vela et al. 2007
@ref: 15679
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Aerococcaceae
genus: Aerococcus
species: Aerococcus suis
full scientific name: Aerococcus suis Vela et al. 2007 emend. Tohno et al. 2014
strain designation: 1821/02
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | motility | confidence |
---|---|---|---|---|
22980 | positive | coccus-shaped | no | |
69480 | no | 97.802 | ||
69480 | positive | 100 | ||
123377 | positive | coccus-shaped | no |
colony morphology
- @ref: 22980
- type of hemolysis: alpha
- hemolysis ability: 1
- colony size: <1.0 mm
- colony shape: circular
- incubation period: 1 day
- medium used: blood agar
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
15679 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
22980 | blood agar | yes | ||
40647 | MEDIUM 45 - for Columbia agar with sheep blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml) | |
123377 | CIP Medium 45 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
15679 | positive | growth | 37 | mesophilic |
22980 | positive | growth | 37.0 | mesophilic |
40647 | positive | growth | 30 | mesophilic |
59577 | positive | growth | 37 | mesophilic |
67770 | positive | growth | 37 | mesophilic |
culture pH
- @ref: 22980
- ability: positive
- type: growth
- pH: 9.6
- PH range: alkaliphile
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
15679 | microaerophile |
15679 | aerobe |
22980 | facultative anaerobe |
59577 | microaerophile |
123377 | facultative anaerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.998 |
halophily
- @ref: 22980
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 6.5 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
22980 | 16808 | 2-dehydro-D-gluconate | - | builds acid from |
22980 | 15963 | ribitol | - | builds acid from |
22980 | 27613 | amygdalin | - | builds acid from |
22980 | 22599 | arabinose | - | builds acid from |
22980 | 22605 | arabinitol | - | builds acid from |
22980 | 18305 | arbutin | - | builds acid from |
22980 | 17057 | cellobiose | - | builds acid from |
22980 | 23456 | cyclodextrin | - | builds acid from |
22980 | 16813 | galactitol | - | builds acid from |
22980 | 17113 | erythritol | - | builds acid from |
22980 | 4853 | esculin | - | builds acid from |
22980 | 28757 | fructose | - | builds acid from |
22980 | 33984 | fucose | - | builds acid from |
22980 | 28260 | galactose | - | builds acid from |
22980 | 28066 | gentiobiose | - | builds acid from |
22980 | 17234 | glucose | - | builds acid from |
22980 | 17754 | glycerol | - | builds acid from |
22980 | 28087 | glycogen | - | builds acid from |
22980 | 17268 | myo-inositol | - | builds acid from |
22980 | 15443 | inulin | - | builds acid from |
22980 | 17716 | lactose | - | builds acid from |
22980 | 25097 | lyxose | - | builds acid from |
22980 | 17306 | maltose | - | builds acid from |
22980 | 29864 | mannitol | - | builds acid from |
22980 | 37684 | mannose | - | builds acid from |
22980 | 6731 | melezitose | - | builds acid from |
22980 | 28053 | melibiose | - | builds acid from |
22980 | 43943 | methyl alpha-D-mannoside | - | builds acid from |
22980 | 320055 | methyl beta-D-glucopyranoside | - | builds acid from |
22980 | 74863 | methyl beta-D-xylopyranoside | - | builds acid from |
22980 | 506227 | N-acetylglucosamine | - | builds acid from |
22980 | 27941 | pullulan | - | builds acid from |
22980 | 16634 | raffinose | - | builds acid from |
22980 | 26546 | rhamnose | - | builds acid from |
22980 | 17814 | salicin | - | builds acid from |
22980 | 30911 | sorbitol | - | builds acid from |
22980 | 27922 | sorbose | - | builds acid from |
22980 | 17992 | sucrose | - | builds acid from |
22980 | 27082 | trehalose | - | builds acid from |
22980 | 32528 | turanose | - | builds acid from |
22980 | 17151 | xylitol | - | builds acid from |
22980 | 18222 | xylose | - | builds acid from |
22980 | 4853 | esculin | - | hydrolysis |
22980 | 606565 | hippurate | - | hydrolysis |
22980 | 17632 | nitrate | - | reduction |
22980 | 17426 | 5-dehydro-D-gluconate | + | builds acid from |
22980 | 16443 | D-tagatose | + | builds acid from |
22980 | 33942 | ribose | + | builds acid from |
22980 | 16199 | urea | +/- | hydrolysis |
123377 | 17632 | nitrate | - | reduction |
123377 | 16301 | nitrite | - | reduction |
68380 | 16199 | urea | - | hydrolysis |
68380 | 29016 | arginine | + | hydrolysis |
68380 | 16024 | D-mannose | - | fermentation |
68380 | 16634 | raffinose | - | fermentation |
68380 | 29985 | L-glutamate | - | degradation |
68380 | 17632 | nitrate | - | reduction |
68380 | 27897 | tryptophan | - | energy source |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
22980 | 15688 | acetoin | no |
123377 | 35581 | indole | no |
68380 | 35581 | indole | no |
metabolite tests
- @ref: 68380
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
22980 | acid phosphatase | + | 3.1.3.2 |
22980 | alkaline phosphatase | + | 3.1.3.1 |
22980 | arginine dihydrolase | + | 3.5.3.6 |
22980 | beta-galactosidase | + | 3.2.1.23 |
22980 | catalase | +/- | 1.11.1.6 |
22980 | cytochrome oxidase | - | 1.9.3.1 |
22980 | esterase (C 4) | + | |
22980 | esterase lipase (C 8) | + | |
22980 | naphthol-AS-BI-phosphohydrolase | + | |
68380 | serine arylamidase | - | |
68380 | glutamyl-glutamate arylamidase | - | |
68380 | histidine arylamidase | - | |
68380 | glycin arylamidase | - | |
68380 | alanine arylamidase | - | 3.4.11.2 |
68380 | tyrosine arylamidase | - | |
68380 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68380 | leucine arylamidase | - | 3.4.11.1 |
68380 | phenylalanine arylamidase | - | |
68380 | leucyl glycin arylamidase | - | 3.4.11.1 |
68380 | proline-arylamidase | - | 3.4.11.5 |
68380 | L-arginine arylamidase | + | |
68380 | alkaline phosphatase | - | 3.1.3.1 |
68380 | tryptophan deaminase | - | 4.1.99.1 |
68380 | alpha-fucosidase | - | 3.2.1.51 |
68380 | glutamate decarboxylase | - | 4.1.1.15 |
68380 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68380 | beta-glucuronidase | - | 3.2.1.31 |
68380 | alpha-arabinosidase | - | 3.2.1.55 |
68380 | beta-glucosidase | - | 3.2.1.21 |
68380 | beta-Galactosidase 6-phosphate | - | |
68380 | beta-galactosidase | + | 3.2.1.23 |
68380 | alpha-galactosidase | - | 3.2.1.22 |
68380 | arginine dihydrolase | + | 3.5.3.6 |
68380 | urease | - | 3.5.1.5 |
123377 | oxidase | - | |
123377 | catalase | + | 1.11.1.6 |
123377 | urease | - | 3.5.1.5 |
API rID32A
@ref | URE | ADH Arg | alpha GAL | beta GAL | beta GP | alpha GLU | beta GLU | alpha ARA | beta GUR | beta NAG | MNE | RAF | GDC | alpha FUC | NIT | IND | PAL | ArgA | ProA | LGA | PheA | LeuA | PyrA | TyrA | AlaA | GlyA | HisA | GGA | SerA |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
15679 | - | + | - | + | - | +/- | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | enrichment culture | enrichment culture duration | enrichment culture temperature | sampling date |
---|---|---|---|---|---|---|---|---|---|
15679 | swine brain, meningitis | Madrid | Spain | ESP | Europe | ||||
22980 | Columbia blood agar plates | 1 day | 37.0 | ||||||
59577 | Swine brain,meningitis | Madrid | Spain | ESP | Europe | 2002 | |||
67770 | Brain of a pig with meningitis | ||||||||
123377 | Animal, Pigs | Madrid | Spain | ESP | Europe |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Disease | #Meningitis |
#Host | #Mammals | #Suidae (Pig,Swine) |
#Host Body-Site | #Organ | #Brain |
Safety information
risk assessment
@ref | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|
15679 | yes | 2 | Risk group (German classification) |
123377 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Aerococcus suis strain CCUG 52530 16S-23S ribosomal RNA intergenic spacer, partial sequence | JN977129 | 222 | ena | 371602 |
15679 | Aerococcus suis partial 16S rRNA gene, type strain 1821/02T | AM230658 | 1332 | ena | 371602 |
67770 | Aerococcus suis JCM 18035 gene for 16S rRNA, partial sequence | LC521974 | 1488 | ena | 371602 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Aerococcus suis strain DSM 21500 | 371602.3 | wgs | patric | 371602 |
66792 | Aerococcus suis DSM 21500 | 2622736423 | draft | img | 371602 |
67770 | Aerococcus suis DSM 21500 | GCA_900176325 | scaffold | ncbi | 371602 |
GC content
@ref | GC-content | method |
---|---|---|
15679 | 37.5 | |
67770 | 37 | thermal denaturation, midpoint method (Tm) |
67770 | 37.5 | high performance liquid chromatography (HPLC) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
gram-positive | yes | 96.806 | yes |
anaerobic | no | 95.8 | no |
halophile | yes | 97.38 | yes |
spore-forming | no | 97.087 | no |
glucose-util | yes | 88.614 | no |
aerobic | no | 92.584 | no |
motile | no | 97.405 | no |
flagellated | no | 98.783 | yes |
thermophile | no | 99.138 | yes |
glucose-ferment | yes | 76.57 | no |
External links
@ref: 15679
culture collection no.: DSM 21500, CCUG 52530, CECT 7139, JCM 18035, CIP 109714
straininfo link
- @ref: 69910
- straininfo: 309415
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Phylogeny | 17551045 | Aerococcus suis sp. nov., isolated from clinical specimens from swine. | Vela AI, Garcia N, Latre MV, Casamayor A, Sanchez-Porro C, Briones V, Ventosa A, Dominguez L, Fernandez-Garayzabal JF | Int J Syst Evol Microbiol | 10.1099/ijs.0.64537-0 | 2007 | Animals, Bacterial Typing Techniques, Catalase/analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Gram-Positive Bacterial Infections/microbiology/*veterinary, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Streptococcaceae/*classification/cytology/genetics/*isolation & purification, Swine, Swine Diseases/*microbiology | Genetics |
Phylogeny | 24421273 | Aerococcus vaginalis sp. nov., isolated from the vaginal mucosa of a beef cow, and emended descriptions of Aerococcus suis, Aerococcus viridans, Aerococcus urinaeequi, Aerococcus urinaehominis, Aerococcus urinae, Aerococcus christensenii and Aerococcus sanguinicola. | Tohno M, Kitahara M, Matsuyama S, Kimura K, Ohkuma M, Tajima K | Int J Syst Evol Microbiol | 10.1099/ijs.0.058081-0 | 2014 | Aerococcus/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Cattle/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Female, Japan, Molecular Sequence Data, Mucous Membrane/microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Vagina/*microbiology | Genetics |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
15679 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21500) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-21500 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
22980 | A. I. Vela,N. Garcia,M. V. Latre,A. Casamayor,C. Sánchez-Porro,V. Briones,A. Ventosa,L. Domínguez,J. F. Fernandez-Garayzábal | 10.1099/ijs.0.64537-0 | Aerococcus suis sp. nov., isolated from clinical specimens from swine | IJSEM 57: 1291-1294 2007 | 17551045 | |
40647 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/7488 | ||||
59577 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 52530) | https://www.ccug.se/strain?id=52530 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68380 | Automatically annotated from API rID32A | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
69910 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID309415.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123377 | Curators of the CIP | Collection of Institut Pasteur (CIP 109714) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109714 |