Strain identifier

BacDive ID: 227

Type strain: Yes

Species: Aerococcus suis

Strain Designation: 1821/02

Strain history: CIP <- 2007, CECT <- 2006, A.I. Vela, Complutense Univ., Madrid, Spain: strain 1821/02

NCBI tax ID(s): 371602 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 15679

BacDive-ID: 227

DSM-Number: 21500

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-positive, coccus-shaped, colony-forming, animal pathogen

description: Aerococcus suis 1821/02 is a microaerophile, mesophilic, Gram-positive animal pathogen that forms circular colonies and was isolated from swine brain, meningitis.

NCBI tax id

  • NCBI tax id: 371602
  • Matching level: species

strain history

@refhistory
15679<- CCUG <- A. I. Vela, Univ. Complutense Madrid <- N. García
67770CECT 7139 <-- A. I. Vela 1821/02.
123377CIP <- 2007, CECT <- 2006, A.I. Vela, Complutense Univ., Madrid, Spain: strain 1821/02

doi: 10.13145/bacdive227.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Aerococcaceae
  • genus: Aerococcus
  • species: Aerococcus suis
  • full scientific name: Aerococcus suis Vela et al. 2007

@ref: 15679

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Aerococcaceae

genus: Aerococcus

species: Aerococcus suis

full scientific name: Aerococcus suis Vela et al. 2007 emend. Tohno et al. 2014

strain designation: 1821/02

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
22980positivecoccus-shapedno
69480no97.802
69480positive100
123377positivecoccus-shapedno

colony morphology

  • @ref: 22980
  • type of hemolysis: alpha
  • hemolysis ability: 1
  • colony size: <1.0 mm
  • colony shape: circular
  • incubation period: 1 day
  • medium used: blood agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15679COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
22980blood agaryes
40647MEDIUM 45 - for Columbia agar with sheep bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Sheepblood (100.000 ml)
123377CIP Medium 45yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=45

culture temp

@refgrowthtypetemperaturerange
15679positivegrowth37mesophilic
22980positivegrowth37.0mesophilic
40647positivegrowth30mesophilic
59577positivegrowth37mesophilic
67770positivegrowth37mesophilic

culture pH

  • @ref: 22980
  • ability: positive
  • type: growth
  • pH: 9.6
  • PH range: alkaliphile

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15679microaerophile
15679aerobe
22980facultative anaerobe
59577microaerophile
123377facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.998

halophily

  • @ref: 22980
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: 6.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
22980168082-dehydro-D-gluconate-builds acid from
2298015963ribitol-builds acid from
2298027613amygdalin-builds acid from
2298022599arabinose-builds acid from
2298022605arabinitol-builds acid from
2298018305arbutin-builds acid from
2298017057cellobiose-builds acid from
2298023456cyclodextrin-builds acid from
2298016813galactitol-builds acid from
2298017113erythritol-builds acid from
229804853esculin-builds acid from
2298028757fructose-builds acid from
2298033984fucose-builds acid from
2298028260galactose-builds acid from
2298028066gentiobiose-builds acid from
2298017234glucose-builds acid from
2298017754glycerol-builds acid from
2298028087glycogen-builds acid from
2298017268myo-inositol-builds acid from
2298015443inulin-builds acid from
2298017716lactose-builds acid from
2298025097lyxose-builds acid from
2298017306maltose-builds acid from
2298029864mannitol-builds acid from
2298037684mannose-builds acid from
229806731melezitose-builds acid from
2298028053melibiose-builds acid from
2298043943methyl alpha-D-mannoside-builds acid from
22980320055methyl beta-D-glucopyranoside-builds acid from
2298074863methyl beta-D-xylopyranoside-builds acid from
22980506227N-acetylglucosamine-builds acid from
2298027941pullulan-builds acid from
2298016634raffinose-builds acid from
2298026546rhamnose-builds acid from
2298017814salicin-builds acid from
2298030911sorbitol-builds acid from
2298027922sorbose-builds acid from
2298017992sucrose-builds acid from
2298027082trehalose-builds acid from
2298032528turanose-builds acid from
2298017151xylitol-builds acid from
2298018222xylose-builds acid from
229804853esculin-hydrolysis
22980606565hippurate-hydrolysis
2298017632nitrate-reduction
22980174265-dehydro-D-gluconate+builds acid from
2298016443D-tagatose+builds acid from
2298033942ribose+builds acid from
2298016199urea+/-hydrolysis
12337717632nitrate-reduction
12337716301nitrite-reduction
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
2298015688acetoinno
12337735581indoleno
6838035581indoleno

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
22980acid phosphatase+3.1.3.2
22980alkaline phosphatase+3.1.3.1
22980arginine dihydrolase+3.5.3.6
22980beta-galactosidase+3.2.1.23
22980catalase+/-1.11.1.6
22980cytochrome oxidase-1.9.3.1
22980esterase (C 4)+
22980esterase lipase (C 8)+
22980naphthol-AS-BI-phosphohydrolase+
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase-3.4.11.1
68380phenylalanine arylamidase-
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase-3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase-3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5
123377oxidase-
123377catalase+1.11.1.6
123377urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
15679-+-+-+/------------+-----------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentenrichment cultureenrichment culture durationenrichment culture temperaturesampling date
15679swine brain, meningitisMadridSpainESPEurope
22980Columbia blood agar plates1 day37.0
59577Swine brain,meningitisMadridSpainESPEurope2002
67770Brain of a pig with meningitis
123377Animal, PigsMadridSpainESPEurope

isolation source categories

Cat1Cat2Cat3
#Infection#Disease#Meningitis
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Organ#Brain

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
15679yes2Risk group (German classification)
1233771Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Aerococcus suis strain CCUG 52530 16S-23S ribosomal RNA intergenic spacer, partial sequenceJN977129222ena371602
15679Aerococcus suis partial 16S rRNA gene, type strain 1821/02TAM2306581332ena371602
67770Aerococcus suis JCM 18035 gene for 16S rRNA, partial sequenceLC5219741488ena371602

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Aerococcus suis strain DSM 21500371602.3wgspatric371602
66792Aerococcus suis DSM 215002622736423draftimg371602
67770Aerococcus suis DSM 21500GCA_900176325scaffoldncbi371602

GC content

@refGC-contentmethod
1567937.5
6777037thermal denaturation, midpoint method (Tm)
6777037.5high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveyes96.806yes
anaerobicno95.8no
halophileyes97.38yes
spore-formingno97.087no
glucose-utilyes88.614no
aerobicno92.584no
motileno97.405no
flagellatedno98.783yes
thermophileno99.138yes
glucose-fermentyes76.57no

External links

@ref: 15679

culture collection no.: DSM 21500, CCUG 52530, CECT 7139, JCM 18035, CIP 109714

straininfo link

  • @ref: 69910
  • straininfo: 309415

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17551045Aerococcus suis sp. nov., isolated from clinical specimens from swine.Vela AI, Garcia N, Latre MV, Casamayor A, Sanchez-Porro C, Briones V, Ventosa A, Dominguez L, Fernandez-Garayzabal JFInt J Syst Evol Microbiol10.1099/ijs.0.64537-02007Animals, Bacterial Typing Techniques, Catalase/analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Gram-Positive Bacterial Infections/microbiology/*veterinary, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Streptococcaceae/*classification/cytology/genetics/*isolation & purification, Swine, Swine Diseases/*microbiologyGenetics
Phylogeny24421273Aerococcus vaginalis sp. nov., isolated from the vaginal mucosa of a beef cow, and emended descriptions of Aerococcus suis, Aerococcus viridans, Aerococcus urinaeequi, Aerococcus urinaehominis, Aerococcus urinae, Aerococcus christensenii and Aerococcus sanguinicola.Tohno M, Kitahara M, Matsuyama S, Kimura K, Ohkuma M, Tajima KInt J Syst Evol Microbiol10.1099/ijs.0.058081-02014Aerococcus/*classification/genetics/isolation & purification, Animals, Bacterial Typing Techniques, Base Composition, Cattle/*microbiology, DNA, Bacterial/genetics, Fatty Acids/chemistry, Female, Japan, Molecular Sequence Data, Mucous Membrane/microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Vagina/*microbiologyGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15679Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21500)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21500
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
22980A. I. Vela,N. Garcia,M. V. Latre,A. Casamayor,C. Sánchez-Porro,V. Briones,A. Ventosa,L. Domínguez,J. F. Fernandez-Garayzábal10.1099/ijs.0.64537-0Aerococcus suis sp. nov., isolated from clinical specimens from swineIJSEM 57: 1291-1294 200717551045
40647Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7488
59577Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 52530)https://www.ccug.se/strain?id=52530
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68380Automatically annotated from API rID32A
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69910Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID309415.1StrainInfo: A central database for resolving microbial strain identifiers
123377Curators of the CIPCollection of Institut Pasteur (CIP 109714)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109714