Strain identifier
BacDive ID: 2262
Type strain:
Species: Carnobacterium maltaromaticum
Strain Designation: LV61
Strain history: CIP <- 1987, NCFB: strain LV61
NCBI tax ID(s): 2751 (species)
General
@ref: 9032
BacDive-ID: 2262
DSM-Number: 20722
keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, Gram-positive, rod-shaped, animal pathogen
description: Carnobacterium maltaromaticum LV61 is a facultative anaerobe, mesophilic, Gram-positive animal pathogen that was isolated from vacuum-packaged meat.
NCBI tax id
- NCBI tax id: 2751
- Matching level: species
strain history
@ref | history |
---|---|
9032 | <- NCDO <- B.G. Shaw, LV61 (Lactobacillus carnis) |
37108 | 1987, NCFB: strain LV61 |
67770 | B. G. Shaw (Lactobacillus carnis MR357) LV61. |
120766 | CIP <- 1987, NCFB: strain LV61 |
doi: 10.13145/bacdive2262.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacillota
- domain: Bacteria
- phylum: Bacillota
- class: Bacilli
- order: Lactobacillales
- family: Carnobacteriaceae
- genus: Carnobacterium
- species: Carnobacterium maltaromaticum
- full scientific name: Carnobacterium maltaromaticum corrig. (Miller et al. 1974) Mora et al. 2003
synonyms
@ref synonym 20215 Lactobacillus maltaromicus 20215 Lactobacillus carnis 20215 Carnobacterium piscicola 20215 Lactobacillus piscicola
@ref: 9032
domain: Bacteria
phylum: Firmicutes
class: Bacilli
order: Lactobacillales
family: Carnobacteriaceae
genus: Carnobacterium
species: Carnobacterium maltaromaticum
full scientific name: Carnobacterium maltaromaticum (Miller et al. 1974) Mora et al. 2003
strain designation: LV61
type strain: no
Morphology
cell morphology
- @ref: 120766
- gram stain: positive
- cell shape: rod-shaped
- motility: no
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
9032 | TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) | yes | https://mediadive.dsmz.de/medium/92 | Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water |
37108 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
120766 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
9032 | positive | growth | 30 | mesophilic |
37108 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 26 | mesophilic |
120766 | positive | growth | 5-30 | |
120766 | no | growth | 37 | mesophilic |
120766 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 120766
- oxygen tolerance: facultative anaerobe
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
120766 | NaCl | positive | growth | 0-6 % |
120766 | NaCl | no | growth | 8 % |
120766 | NaCl | no | growth | 10 % |
murein
- @ref: 9032
- murein short key: A31
- type: A1gamma m-Dpm-direct
metabolite utilization
@ref | metabolite | utilization activity | kind of utilization tested | Chebi-ID |
---|---|---|---|---|
68371 | Potassium 2-ketogluconate | - | builds acid from | |
68371 | gluconate | + | builds acid from | 24265 |
68371 | L-arabitol | - | builds acid from | 18403 |
68371 | D-arabitol | - | builds acid from | 18333 |
68371 | L-fucose | - | builds acid from | 18287 |
68371 | D-fucose | - | builds acid from | 28847 |
68371 | D-tagatose | - | builds acid from | 16443 |
68371 | D-lyxose | - | builds acid from | 62318 |
68371 | turanose | + | builds acid from | 32528 |
68371 | gentiobiose | + | builds acid from | 28066 |
68371 | xylitol | - | builds acid from | 17151 |
68371 | glycogen | - | builds acid from | 28087 |
68371 | starch | + | builds acid from | 28017 |
68371 | melezitose | + | builds acid from | 6731 |
68371 | inulin | + | builds acid from | 15443 |
68371 | trehalose | + | builds acid from | 27082 |
68371 | sucrose | + | builds acid from | 17992 |
68371 | lactose | + | builds acid from | 17716 |
68371 | maltose | + | builds acid from | 17306 |
68371 | cellobiose | + | builds acid from | 17057 |
68371 | salicin | + | builds acid from | 17814 |
68371 | esculin | + | builds acid from | 4853 |
68371 | arbutin | + | builds acid from | 18305 |
68371 | amygdalin | + | builds acid from | 27613 |
68371 | N-acetylglucosamine | + | builds acid from | 59640 |
68371 | methyl alpha-D-glucopyranoside | + | builds acid from | 320061 |
68371 | D-sorbitol | + | builds acid from | 17924 |
68371 | D-mannitol | + | builds acid from | 16899 |
68371 | myo-inositol | + | builds acid from | 17268 |
68371 | galactitol | - | builds acid from | 16813 |
68371 | L-rhamnose | - | builds acid from | 62345 |
68371 | L-sorbose | - | builds acid from | 17266 |
68371 | D-mannose | + | builds acid from | 16024 |
68371 | D-fructose | + | builds acid from | 15824 |
68371 | D-glucose | + | builds acid from | 17634 |
68371 | D-galactose | + | builds acid from | 12936 |
68371 | methyl beta-D-xylopyranoside | - | builds acid from | 74863 |
68371 | ribitol | - | builds acid from | 15963 |
68371 | L-xylose | - | builds acid from | 65328 |
68371 | D-xylose | - | builds acid from | 65327 |
68371 | D-ribose | + | builds acid from | 16988 |
68371 | L-arabinose | - | builds acid from | 30849 |
68371 | D-arabinose | - | builds acid from | 17108 |
68371 | erythritol | - | builds acid from | 17113 |
68371 | glycerol | + | builds acid from | 17754 |
120766 | citrate | - | carbon source | 16947 |
120766 | esculin | + | hydrolysis | 4853 |
120766 | hippurate | + | hydrolysis | 606565 |
120766 | nitrate | - | builds gas from | 17632 |
120766 | nitrate | - | reduction | 17632 |
120766 | nitrite | - | builds gas from | 16301 |
120766 | nitrite | - | reduction | 16301 |
metabolite production
- @ref: 120766
- Chebi-ID: 35581
- metabolite: indole
- production: no
enzymes
@ref | value | activity | ec |
---|---|---|---|
120766 | oxidase | - | |
120766 | beta-galactosidase | + | 3.2.1.23 |
120766 | alcohol dehydrogenase | - | 1.1.1.1 |
120766 | gelatinase | - | |
120766 | amylase | - | |
120766 | DNase | - | |
120766 | caseinase | - | 3.4.21.50 |
120766 | catalase | - | 1.11.1.6 |
120766 | tween esterase | + | |
120766 | gamma-glutamyltransferase | - | 2.3.2.2 |
120766 | lecithinase | - | |
120766 | lipase | - | |
120766 | lysine decarboxylase | - | 4.1.1.18 |
120766 | ornithine decarboxylase | - | 4.1.1.17 |
120766 | phenylalanine ammonia-lyase | - | 4.3.1.24 |
120766 | protease | - | |
120766 | tryptophan deaminase | - | |
120766 | urease | - | 3.5.1.5 |
API 50CHac
@ref | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120766 | + | - | - | - | + | - | - | - | - | + | + | + | + | - | - | - | + | + | + | +/- | + | + | + | + | + | + | + | + | + | +/- | + | + | + | + | +/- | + | - | - | + | + | - | - | - | - | - | - | + | - | +/- |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120766 | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
9032 | vacuum-packaged meat |
67770 | Vacuum-packed lamb |
120766 | Food, Refrigerated vacuum-packged meet |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Engineered | #Food production | #Bottled, canned, packed food |
#Engineered | #Food production | #Meat |
taxonmaps
- @ref: 69479
- File name: preview.99_2222.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_41;97_1423;98_1732;99_2222&stattab=map
- Last taxonomy: Carnobacterium maltaromaticum
- 16S sequence: LC306852
- Sequence Identity:
- Total samples: 12837
- soil counts: 1440
- aquatic counts: 2720
- animal counts: 8257
- plant counts: 420
Safety information
risk assessment
@ref | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|
9032 | yes | 2 | Risk group (German classification) |
120766 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Lactobacillus carnis 16S ribosomal RNA | M58812 | 1503 | ena | 2751 |
67770 | Carnobacterium maltaromaticum gene for 16S ribosomal RNA, partial sequence, strain: JCM 9135 | LC306852 | 1488 | ena | 2751 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Carnobacterium maltaromaticum strain DSM 20722 | 2751.33 | wgs | patric | 2751 |
66792 | Carnobacterium maltaromaticum DSM 20722 | 2700989269 | draft | img | 2751 |
67770 | Carnobacterium maltaromaticum DSM 20722 | GCA_001437035 | scaffold | ncbi | 2751 |
GC content
@ref | GC-content | method |
---|---|---|
9032 | 35.2 | |
67770 | 35.2 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | no | 94.036 | no |
gram-positive | yes | 93.173 | no |
anaerobic | no | 96.141 | no |
halophile | yes | 72.681 | no |
spore-forming | no | 82.016 | no |
glucose-util | yes | 87.599 | no |
flagellated | no | 95.394 | no |
aerobic | no | 90.522 | no |
thermophile | no | 99.929 | yes |
glucose-ferment | yes | 83.418 | no |
External links
@ref: 9032
culture collection no.: DSM 20722, ATCC 43225, NCDO 2764, JCM 9135, CIP 103043
straininfo link
- @ref: 71821
- straininfo: 1689
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
9032 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20722) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-20722 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
37108 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/14796 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68371 | Automatically annotated from API 50CH acid | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
71821 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1689.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120766 | Curators of the CIP | Collection of Institut Pasteur (CIP 103043) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103043 |