Strain identifier

BacDive ID: 2258

Type strain: Yes

Species: Carnobacterium maltaromaticum

Strain Designation: MX 5, MX5

Strain history: CIP <- 1988, DSM <- M.E. Morgan: strain MX5

NCBI tax ID(s): 1449341 (strain), 2751 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8747

BacDive-ID: 2258

DSM-Number: 20342

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-positive, animal pathogen

description: Carnobacterium maltaromaticum MX 5 is an aerobe, mesophilic, Gram-positive animal pathogen that was isolated from milk with malty flavour.

NCBI tax id

NCBI tax idMatching level
1449341strain
2751species

strain history

@refhistory
8747<- M.E. Morgan, MX 5
67770ATCC 27865 <-- M. E. Morgan MX5.
120768CIP <- 1988, DSM <- M.E. Morgan: strain MX5

doi: 10.13145/bacdive2258.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacillota
  • domain: Bacteria
  • phylum: Bacillota
  • class: Bacilli
  • order: Lactobacillales
  • family: Carnobacteriaceae
  • genus: Carnobacterium
  • species: Carnobacterium maltaromaticum
  • full scientific name: Carnobacterium maltaromaticum corrig. (Miller et al. 1974) Mora et al. 2003
  • synonyms

    @refsynonym
    20215Lactobacillus maltaromicus
    20215Lactobacillus carnis
    20215Carnobacterium piscicola
    20215Lactobacillus piscicola

@ref: 8747

domain: Bacteria

phylum: Firmicutes

class: Bacilli

order: Lactobacillales

family: Carnobacteriaceae

genus: Carnobacterium

species: Carnobacterium maltaromaticum

full scientific name: Carnobacterium maltaromaticum (Miller et al. 1974) Mora et al. 2003

strain designation: MX 5, MX5

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shapemotility
69480positive100
120768positiverod-shapedno

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8747COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
8747TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
39686MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
120768CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72
120768CIP Medium 29yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=29
120768CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
8747positivegrowth30mesophilic
39686positivegrowth30mesophilic
49935positivegrowth30mesophilic
67770positivegrowth30mesophilic
120768positivegrowth15-37
120768nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
49935aerobe
120768facultative anaerobe

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 99.887

murein

  • @ref: 8747
  • murein short key: A31
  • type: A1gamma m-Dpm-direct

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
12076817632nitrate-reduction
12076816301nitrite-reduction
12076817632nitrate+respiration
6837917632nitrate-reduction
683794853esculin+hydrolysis
6837916199urea-hydrolysis
683795291gelatin-hydrolysis
6837917634D-glucose+fermentation
6837916988D-ribose+fermentation
6837965327D-xylose-fermentation
6837916899D-mannitol-fermentation
6837917306maltose+fermentation
6837917716lactose+fermentation
6837917992sucrose+fermentation
6837928087glycogen-fermentation
6838129016arginine-hydrolysis
6838116988D-ribose+builds acid from
6838116899D-mannitol-builds acid from
6838130911sorbitol-builds acid from
6838117716lactose+builds acid from
6838127082trehalose+builds acid from
6838116634raffinose-builds acid from
6838117992sucrose+builds acid from
6838130849L-arabinose-builds acid from
6838118333D-arabitol-builds acid from
6838140585alpha-cyclodextrin+builds acid from
6838128087glycogen-builds acid from
6838127941pullulan-builds acid from
6838117306maltose+builds acid from
6838128053melibiose-builds acid from
683816731melezitose-builds acid from
68381320055methyl beta-D-glucopyranoside+builds acid from
6838116443D-tagatose-builds acid from
6838116199urea-hydrolysis

metabolite production

  • @ref: 68381
  • Chebi-ID: 15688
  • metabolite: acetoin
  • production: yes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-test
6838115688acetoin+
12076815688acetoin-

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382lipase (C 14)-
68382alkaline phosphatase-3.1.3.1
68381urease-3.5.1.5
68381beta-mannosidase+3.2.1.25
68381glycyl tryptophan arylamidase+
68381N-acetyl-beta-glucosaminidase+3.2.1.52
68381pyrrolidonyl arylamidase+3.4.19.3
68381beta-galactosidase+3.2.1.23
68381Alanyl-Phenylalanyl-Proline arylamidase-
68381alpha-galactosidase-3.2.1.22
68381beta-glucuronidase-3.2.1.31
68381beta-glucosidase+3.2.1.21
68381arginine dihydrolase-3.5.3.6
68379catalase+1.11.1.6
68379gelatinase-
68379urease-3.5.1.5
68379beta-glucosidase+3.2.1.21
68379N-acetyl-beta-glucosaminidase+3.2.1.52
68379alpha-glucosidase+3.2.1.20
68379beta-galactosidase+3.2.1.23
68379beta-glucuronidase-3.2.1.31
68379alkaline phosphatase+3.1.3.1
68379pyrrolidonyl arylamidase+3.4.19.3
68379pyrazinamidase-3.5.1.B15
120768oxidase-
120768alcohol dehydrogenase-1.1.1.1
120768catalase-1.11.1.6
120768lysine decarboxylase-4.1.1.18
120768ornithine decarboxylase-4.1.1.17

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    49935C14:08.814
    49935C16:019.516
    49935C18:06.718
    49935C14:1 ω7c2.913.85
    49935C16:1 ω9c11.315.774
    49935C18:1 ω9c38.217.769
    49935C18:2 ω6,9c/C18:0 ANTE717.724
    49935C20:1 ω9c1.719.77
    49935C20:2 ω6,9c2.419.735
    49935unknown 13.7661.513.766
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API coryne

@refNITPYZPYRAPALbeta GURbeta GALalpha GLUbeta NAGESCUREGELControlGLURIBXYLMANMALLACSACGLYGCAT
49935--++-++++---++--+++-+

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
8747--+/-+/--+/----+/-++---+++/---
120768--++------++---++---

API rID32STR

@refADH Argbeta GLUbeta GARbeta GURalpha GALPALRIBMANSORLACTRERAFSACLARADARLCDEXVPAPPAbeta GALPyrAbeta NAGGTAHIPGLYGPULMALMELMLZMbeta DGTAGbeta MANURE
8747-+---+/-+--++-+--++-+++++/---+--+-+-

Isolation, sampling and environmental information

isolation

@refsample type
8747milk with malty flavour
49935Raw milk with malty flavour
67770Raw milk with malt flavour
120768Food, Raw milk with malty flavour

isolation source categories

  • Cat1: #Host Body Product
  • Cat2: #Fluids
  • Cat3: #Milk

taxonmaps

  • @ref: 69479
  • File name: preview.99_2222.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_13;96_41;97_1423;98_1732;99_2222&stattab=map
  • Last taxonomy: Carnobacterium maltaromaticum
  • 16S sequence: LC065032
  • Sequence Identity:
  • Total samples: 12837
  • soil counts: 1440
  • aquatic counts: 2720
  • animal counts: 8257
  • plant counts: 420

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
8747yes2Risk group (German classification)
1207681Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Carnobacterium maltaromaticum strain ATCC 27865 16S ribosomal RNA gene, partial sequenceGQ304909784ena2751
20218Carnobacterium maltaromaticum strain ATCC 27865 16S ribosomal RNA gene, partial sequenceJF749288809ena2751
20218Carnobacterium maltaromaticum strain DSM 20342 16S ribosomal RNA gene, partial sequenceM588251501ena2751
20218Lactobacillus maltaromicus gene for 16S ribosomal RNA, partial sequenceD31696195ena2751
20218L.maltaromicus 16S ribosomal RNAX544201499ena2751
67770Carnobacterium maltaromaticum gene for 16S ribosomal RNA, partial sequence, strain: JCM 1154LC0650321456ena2751

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Carnobacterium maltaromaticum DSM 20342 MX5GCA_000744945contigncbi1449341
66792Carnobacterium maltaromaticum DSM 203421449341.4wgspatric1449341
66792Carnobacterium maltaromaticum DSM 20342 strain MX51449341.3wgspatric1449341
66792Carnobacterium maltaromaticum MX5, DSM 203422579778520draftimg2751
66792Carnobacterium maltaromaticum DSM 203422700989263draftimg1449341
67770Carnobacterium maltaromaticum DSM 20342GCA_001437315scaffoldncbi1449341

GC content

@refGC-content
874736.0
6777036

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingyes88no
motileno92.677no
gram-positiveyes92.112no
anaerobicno94.786no
halophileyes72.655no
spore-formingno77.722no
thermophileno99.961yes
glucose-utilyes89.037no
aerobicno92.067no
flagellatedno95.071no
glucose-fermentyes83.101yes

External links

@ref: 8747

culture collection no.: DSM 20342, ATCC 27865, CCUG 30142, LMG 6903, JCM 1154, BCRC 14054, CECT 4134, CIP 103135, KCTC 3602, NCFB 2382, NCIMB 11966, NRIC 1691, NRRL B-14852, NCDO 2382

straininfo link

  • @ref: 71817
  • straininfo: 3325

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11016698Numerical phenetic study of the genus Carnobacterium.Lai S, Manchester LNAntonie Van Leeuwenhoek10.1023/a:10027236096752000*Bacterial Typing Techniques, Cluster Analysis, Enterococcus/classification, Lactobacillaceae/*classification, Lactobacillus/classification, PhenotypePhenotype
Phylogeny12807185Reclassification of Lactobacillus maltaromicus (Miller et al. 1974) DSM 20342(T) and DSM 20344 and Carnobacterium piscicola (Collins et al. 1987) DSM 20730(T) and DSM 20722 as Carnobacterium maltaromaticum comb. nov.Mora D, Scarpellini M, Franzetti L, Colombo S, Galli AInt J Syst Evol Microbiol10.1099/ijs.0.02405-02003Bacterial Typing Techniques, Carbohydrate Metabolism, DNA, Ribosomal Spacer/analysis, Genotype, Lactobacillaceae/chemistry/*classification/genetics/metabolism, Lactobacillus/chemistry/*classification/genetics/metabolism, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Random Amplified Polymorphic DNA Technique, Restriction MappingMetabolism
Genetics20537393Defensin of the zebra mussel (Dreissena polymorpha): molecular structure, in vitro expression, antimicrobial activity, and potential functions.Xu W, Faisal MMol Immunol10.1016/j.molimm.2010.01.0252010Amino Acid Sequence, Animals, Defensins/*chemistry/genetics/pharmacology/physiology, Dreissena/*immunology, Microbial Sensitivity Tests, Molecular Sequence Data, Polymerase Chain Reaction
Genetics32627213Genome-wide comparison of Carnobacterium maltaromaticum derived from diseased fish harbouring important virulence-related genes.Roh H, Kim BS, Lee MK, Park CI, Kim DHJ Fish Dis10.1111/jfd.132082020Animals, Aquaculture, Carnobacterium/*genetics/*pathogenicity, Fish Diseases/*microbiology, Genome, Bacterial, Gram-Positive Bacterial Infections/microbiology/*veterinary, Oncorhynchus mykiss, Republic of Korea, Virulence/*genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8747Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 20342)https://www.dsmz.de/collection/catalogue/details/culture/DSM-20342
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
39686Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14899
49935Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30142)https://www.ccug.se/strain?id=30142
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68379Automatically annotated from API Coryne
68381Automatically annotated from API rID32STR
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
71817Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID3325.1StrainInfo: A central database for resolving microbial strain identifiers
120768Curators of the CIPCollection of Institut Pasteur (CIP 103135)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103135