Strain identifier

BacDive ID: 2239

Type strain: Yes

Species: Agitococcus lubricus

Strain history: <- UQM

NCBI tax ID(s): 1077255 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 2327

BacDive-ID: 2239

DSM-Number: 5822

keywords: genome sequence, Bacteria, mesophilic, Gram-negative

description: Agitococcus lubricus DSM 5822 is a mesophilic, Gram-negative bacterium of the family Moraxellaceae.

NCBI tax id

  • NCBI tax id: 1077255
  • Matching level: species

strain history

  • @ref: 2327
  • history: <- UQM

doi: 10.13145/bacdive2239.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Pseudomonadales
  • family: Moraxellaceae
  • genus: Agitococcus
  • species: Agitococcus lubricus
  • full scientific name: Agitococcus lubricus Franzmann and Skerman 1981

@ref: 2327

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Lactobacillales

family: Moraxellaceae

genus: Agitococcus

species: Agitococcus lubricus

full scientific name: Agitococcus lubricus Franzmann and Skerman 1981

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 99.998

Culture and growth conditions

culture medium

  • @ref: 2327
  • name: TWEEN 80A MEDIUM (DSMZ Medium 618)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/618
  • composition: Name: TWEEN 80A MEDIUM (DSMZ Medium 618) Composition: Agar 15.0 g/l Tween 80 10.0 g/l Casitone 5.0 g/l Yeast extract 3.0 g/l MgSO4 x 7 H2O 2.0 g/l Distilled water

culture temp

  • @ref: 2327
  • growth: positive
  • type: growth
  • temperature: 28
  • range: mesophilic

Physiology and metabolism

spore formation

@refspore formationconfidence
69481no100
69480no99.982

Isolation, sampling and environmental information

isolation

  • @ref: 2327
  • geographic location: Brisbane
  • country: Australia
  • origin.country: AUS
  • continent: Australia and Oceania

Safety information

risk assessment

  • @ref: 2327
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Agitococcus lubricus DSM 5822GCA_003051055contigncbi1077255
66792Agitococcus lubricus strain DSM 58221077255.3wgspatric1077255
66792Agitococcus lubricus DSM 58222737471639draftimg1077255

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileno85.402no
flagellatedno93.874no
gram-positiveno99.102no
anaerobicno98.617no
aerobicyes77.568no
halophileno88.372no
spore-formingno96.316no
thermophileno98.063yes
glucose-utilno81.607no
glucose-fermentno93.194no

External links

@ref: 2327

culture collection no.: DSM 5822, UQM 1981

straininfo link

  • @ref: 71801
  • straininfo: 48013

Reference

@idauthorscataloguedoi/urltitle
2327Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5822)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5822
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71801Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID48013.1StrainInfo: A central database for resolving microbial strain identifiers