Strain identifier
BacDive ID: 2239
Type strain:
Species: Agitococcus lubricus
Strain history: <- UQM
NCBI tax ID(s): 1077255 (species)
version 8.1 (current version)
General
@ref: 2327
BacDive-ID: 2239
DSM-Number: 5822
keywords: genome sequence, Bacteria, mesophilic, Gram-negative
description: Agitococcus lubricus DSM 5822 is a mesophilic, Gram-negative bacterium of the family Moraxellaceae.
NCBI tax id
- NCBI tax id: 1077255
- Matching level: species
strain history
- @ref: 2327
- history: <- UQM
doi: 10.13145/bacdive2239.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Gammaproteobacteria
- order: Pseudomonadales
- family: Moraxellaceae
- genus: Agitococcus
- species: Agitococcus lubricus
- full scientific name: Agitococcus lubricus Franzmann and Skerman 1981
@ref: 2327
domain: Bacteria
phylum: Proteobacteria
class: Gammaproteobacteria
order: Lactobacillales
family: Moraxellaceae
genus: Agitococcus
species: Agitococcus lubricus
full scientific name: Agitococcus lubricus Franzmann and Skerman 1981
type strain: yes
Morphology
cell morphology
- @ref: 69480
- gram stain: negative
- confidence: 99.998
Culture and growth conditions
culture medium
- @ref: 2327
- name: TWEEN 80A MEDIUM (DSMZ Medium 618)
- growth: yes
- link: https://mediadive.dsmz.de/medium/618
- composition: Name: TWEEN 80A MEDIUM (DSMZ Medium 618) Composition: Agar 15.0 g/l Tween 80 10.0 g/l Casitone 5.0 g/l Yeast extract 3.0 g/l MgSO4 x 7 H2O 2.0 g/l Distilled water
culture temp
- @ref: 2327
- growth: positive
- type: growth
- temperature: 28
- range: mesophilic
Physiology and metabolism
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.982 |
Isolation, sampling and environmental information
isolation
- @ref: 2327
- geographic location: Brisbane
- country: Australia
- origin.country: AUS
- continent: Australia and Oceania
Safety information
risk assessment
- @ref: 2327
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Agitococcus lubricus DSM 5822 | GCA_003051055 | contig | ncbi | 1077255 |
66792 | Agitococcus lubricus strain DSM 5822 | 1077255.3 | wgs | patric | 1077255 |
66792 | Agitococcus lubricus DSM 5822 | 2737471639 | draft | img | 1077255 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | no | 85.402 | no |
flagellated | no | 93.874 | no |
gram-positive | no | 99.102 | no |
anaerobic | no | 98.617 | no |
aerobic | yes | 77.568 | no |
halophile | no | 88.372 | no |
spore-forming | no | 96.316 | no |
thermophile | no | 98.063 | yes |
glucose-util | no | 81.607 | no |
glucose-ferment | no | 93.194 | no |
External links
@ref: 2327
culture collection no.: DSM 5822, UQM 1981
straininfo link
- @ref: 71801
- straininfo: 48013
Reference
@id | authors | catalogue | doi/url | title |
---|---|---|---|---|
2327 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5822) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-5822 | |
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |
71801 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID48013.1 | StrainInfo: A central database for resolving microbial strain identifiers |