Strain identifier

BacDive ID: 2223

Type strain: Yes

Species: Sulfurospirillum deleyianum

Strain Designation: 5175

Strain history: <- N. Pfennig <- R.S. Wolfe and N. Pfennig, strain 5175

NCBI tax ID(s): 525898 (strain), 65553 (species)

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General

@ref: 2920

BacDive-ID: 2223

DSM-Number: 6946

keywords: genome sequence, Bacteria, anaerobe, mesophilic, motile

description: Sulfurospirillum deleyianum 5175 is an anaerobe, mesophilic, motile bacterium that was isolated from mud, forest pond.

NCBI tax id

NCBI tax idMatching level
525898strain
65553species

strain history

  • @ref: 2920
  • history: <- N. Pfennig <- R.S. Wolfe and N. Pfennig, strain 5175

doi: 10.13145/bacdive2223.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Sulfurospirillum
  • species: Sulfurospirillum deleyianum
  • full scientific name: Sulfurospirillum deleyianum Schumacher et al. 1993

@ref: 2920

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Sulfurospirillum

species: Sulfurospirillum deleyianum

full scientific name: Sulfurospirillum deleyianum Schumacher et al. 1993

strain designation: 5175

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram stain
69480yes90.625
69480100negative

multimedia

  • @ref: 66793
  • multimedia content: EM_DSM_6946_1.jpg
  • caption: electron microscopic image
  • intellectual property rights: © HZI/Manfred Rohde

Culture and growth conditions

culture medium

  • @ref: 2920
  • name: SULFUROSPIRILLUM MEDIUM (DSMZ Medium 541)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/541
  • composition: Name: SULFUROSPIRILLUM MEDIUM (DSMZ Medium 541) Composition: Na2-fumarate 3.98406 g/l Na2CO3 1.49402 g/l KH2PO4 1.35458 g/l MgSO4 x 7 H2O 0.368525 g/l NH4Cl 0.268924 g/l CaCl2 x 2 H2O 0.0996016 g/l L-Cysteine HCl x H2O 0.0697211 g/l HCl 0.00498008 g/l FeCl2 x 4 H2O 0.00298805 g/l CoCl2 x 6 H2O 0.000378486 g/l MnCl2 x 4 H2O 0.000199203 g/l ZnCl2 0.000139442 g/l Na2MoO4 x 2 H2O 7.17131e-05 g/l NiCl2 x 6 H2O 4.78088e-05 g/l H3BO3 1.19522e-05 g/l CuCl2 x 2 H2O 3.98406e-06 g/l Distilled water

culture temp

  • @ref: 2920
  • growth: positive
  • type: growth
  • temperature: 28-30
  • range: mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
2920anaerobe
69480anaerobe97.966

spore formation

@refspore formationconfidence
69481no100
69480no99.997

compound production

@refcompound
2920nitrite reductase
2920sulfur oxidoreductase

Isolation, sampling and environmental information

isolation

  • @ref: 2920
  • sample type: mud, forest pond
  • geographic location: Heiningen near Braunschweig
  • country: Germany
  • origin.country: DEU
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Mud (Sludge)
#Environmental#Aquatic#Pond (small)
#Environmental#Terrestrial#Forest

Safety information

risk assessment

  • @ref: 2920
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Sulfurospirillum deleyianum DSM 6946GCA_000024885completencbi525898
66792Sulfurospirillum deleyianum DSM 6946525898.7completepatric525898
66792Sulfurospirillum deleyianum 5175, DSM 6946646311960completeimg525898

GC content

  • @ref: 2920
  • GC-content: 40.6

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes90.294no
flagellatedyes70.73no
gram-positiveno98.765no
anaerobicyes96.272yes
aerobicno98.211yes
halophileno82.814no
spore-formingno94.901no
thermophileno92.043yes
glucose-utilno85.64no
glucose-fermentno90.017no

External links

@ref: 2920

culture collection no.: DSM 6946, ATCC 51133

straininfo link

  • @ref: 71786
  • straininfo: 92189

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2920Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6946)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6946
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
66793Mukherjee et al.10.1038/nbt.3886GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life 35: 676-683 201728604660
66794Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg10.1093/nar/gkaa1025BRENDA, the ELIXIR core data resource in 2021: new developments and updatesNucleic Acids Res. 49: D498-D508 202033211880
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71786Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92189.1StrainInfo: A central database for resolving microbial strain identifiers