Strain identifier
BacDive ID: 2223
Type strain:
Species: Sulfurospirillum deleyianum
Strain Designation: 5175
Strain history: <- N. Pfennig <- R.S. Wolfe and N. Pfennig, strain 5175
NCBI tax ID(s): 525898 (strain), 65553 (species)
General
@ref: 2920
BacDive-ID: 2223
DSM-Number: 6946
keywords: genome sequence, Bacteria, anaerobe, mesophilic, motile
description: Sulfurospirillum deleyianum 5175 is an anaerobe, mesophilic, motile bacterium that was isolated from mud, forest pond.
NCBI tax id
NCBI tax id | Matching level |
---|---|
525898 | strain |
65553 | species |
strain history
- @ref: 2920
- history: <- N. Pfennig <- R.S. Wolfe and N. Pfennig, strain 5175
doi: 10.13145/bacdive2223.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Sulfurospirillum
- species: Sulfurospirillum deleyianum
- full scientific name: Sulfurospirillum deleyianum Schumacher et al. 1993
@ref: 2920
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Sulfurospirillum
species: Sulfurospirillum deleyianum
full scientific name: Sulfurospirillum deleyianum Schumacher et al. 1993
strain designation: 5175
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain |
---|---|---|---|
69480 | yes | 90.625 | |
69480 | 100 | negative |
multimedia
- @ref: 66793
- multimedia content: EM_DSM_6946_1.jpg
- caption: electron microscopic image
- intellectual property rights: © HZI/Manfred Rohde
Culture and growth conditions
culture medium
- @ref: 2920
- name: SULFUROSPIRILLUM MEDIUM (DSMZ Medium 541)
- growth: yes
- link: https://mediadive.dsmz.de/medium/541
- composition: Name: SULFUROSPIRILLUM MEDIUM (DSMZ Medium 541) Composition: Na2-fumarate 3.98406 g/l Na2CO3 1.49402 g/l KH2PO4 1.35458 g/l MgSO4 x 7 H2O 0.368525 g/l NH4Cl 0.268924 g/l CaCl2 x 2 H2O 0.0996016 g/l L-Cysteine HCl x H2O 0.0697211 g/l HCl 0.00498008 g/l FeCl2 x 4 H2O 0.00298805 g/l CoCl2 x 6 H2O 0.000378486 g/l MnCl2 x 4 H2O 0.000199203 g/l ZnCl2 0.000139442 g/l Na2MoO4 x 2 H2O 7.17131e-05 g/l NiCl2 x 6 H2O 4.78088e-05 g/l H3BO3 1.19522e-05 g/l CuCl2 x 2 H2O 3.98406e-06 g/l Distilled water
culture temp
- @ref: 2920
- growth: positive
- type: growth
- temperature: 28-30
- range: mesophilic
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance | confidence |
---|---|---|
2920 | anaerobe | |
69480 | anaerobe | 97.966 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.997 |
compound production
@ref | compound |
---|---|
2920 | nitrite reductase |
2920 | sulfur oxidoreductase |
Isolation, sampling and environmental information
isolation
- @ref: 2920
- sample type: mud, forest pond
- geographic location: Heiningen near Braunschweig
- country: Germany
- origin.country: DEU
- continent: Europe
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Mud (Sludge) |
#Environmental | #Aquatic | #Pond (small) |
#Environmental | #Terrestrial | #Forest |
Safety information
risk assessment
- @ref: 2920
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Sulfurospirillum deleyianum DSM 6946 | GCA_000024885 | complete | ncbi | 525898 |
66792 | Sulfurospirillum deleyianum DSM 6946 | 525898.7 | complete | patric | 525898 |
66792 | Sulfurospirillum deleyianum 5175, DSM 6946 | 646311960 | complete | img | 525898 |
GC content
- @ref: 2920
- GC-content: 40.6
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 90.294 | no |
flagellated | yes | 70.73 | no |
gram-positive | no | 98.765 | no |
anaerobic | yes | 96.272 | yes |
aerobic | no | 98.211 | yes |
halophile | no | 82.814 | no |
spore-forming | no | 94.901 | no |
thermophile | no | 92.043 | yes |
glucose-util | no | 85.64 | no |
glucose-ferment | no | 90.017 | no |
External links
@ref: 2920
culture collection no.: DSM 6946, ATCC 51133
straininfo link
- @ref: 71786
- straininfo: 92189
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
2920 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6946) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-6946 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66793 | Mukherjee et al. | 10.1038/nbt.3886 | GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life | 35: 676-683 2017 | 28604660 | |
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
71786 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92189.1 | StrainInfo: A central database for resolving microbial strain identifiers |