Strain identifier

BacDive ID: 218

Type strain: Yes

Species: Trueperella abortisuis

Strain Designation: Murakami

Strain history: CIP <- 2009, S. Murakami, Tokyo Univ. Agriculture, Dept. animal Sci., Atsugi, Japan <- R. Azuma, Higashi-tokura, Kokubunnji, Tokyo, Japan: strain Murakami

NCBI tax ID(s): 445930 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 8143

BacDive-ID: 218

DSM-Number: 19515

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, coccus-shaped, colony-forming, animal pathogen

description: Trueperella abortisuis Murakami is an anaerobe, mesophilic, coccus-shaped animal pathogen that forms circular colonies and was isolated from placenta of sow after abortion.

NCBI tax id

  • NCBI tax id: 445930
  • Matching level: species

strain history

@refhistory
8143<- S. Murakami, Tokyo Univ. Agriculture, Dept. Animal Sci., Atsugi, Japan <- R. Azuma; strain Murakami
67770S. Murakami strain Murakami.
115977CIP <- 2009, S. Murakami, Tokyo Univ. Agriculture, Dept. animal Sci., Atsugi, Japan <- R. Azuma, Higashi-tokura, Kokubunnji, Tokyo, Japan: strain Murakami

doi: 10.13145/bacdive218.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Trueperella
  • species: Trueperella abortisuis
  • full scientific name: Trueperella abortisuis (Azuma et al. 2009) Yassin et al. 2011
  • synonyms

    • @ref: 20215
    • synonym: Arcanobacterium abortisuis

@ref: 8143

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Trueperella

species: Trueperella abortisuis

full scientific name: Trueperella abortisuis (Azuma et al. 2009) Yassin et al. 2011

strain designation: Murakami

type strain: yes

Morphology

cell morphology

@refcell lengthcell widthcell shapemotilitygram stain
229760.3-2.5 µm0.2-0.9 µmcoccus-shapedno
29032rod-shapedpositive
115977rod-shapednopositive

colony morphology

@reftype of hemolysishemolysis abilitycolony sizecolony colorcolony shapeincubation period
22976beta10.5-1.5 mmtranslucentcircular2-3 days
616842 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
8143PYG MEDIUM (MODIFIED) (DSMZ Medium 104)yeshttps://mediadive.dsmz.de/medium/104Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
33644MEDIUM 20 - for Anaerobic bacteriayesAgar (15.000 g);Glucose (5.000 g);Yeast extract (20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);distilled water (1000.000 ml);Hemin solution -M00149 (25.000 ml)
115977CIP Medium 20yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=20

culture temp

@refgrowthtypetemperaturerange
8143positivegrowth37mesophilic
33644positivegrowth37mesophilic
61684positivegrowth37mesophilic
67770positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
8143anaerobe
29032anaerobe
61684microaerophile
115977anaerobe

spore formation

  • @ref: 22976
  • spore formation: no

murein

  • @ref: 22976
  • murein short key: A11.51
  • type: A5alpha L-Lys-L-Lys-D-Glu

observation

  • @ref: 67770
  • observation: quinones: MK-10(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2297617924D-sorbitol-builds acid from
2297665327D-xylose-builds acid from
2297630849L-arabinose-builds acid from
2297662345L-rhamnose-builds acid from
2297637684mannose-builds acid from
2297616634raffinose-builds acid from
2297617814salicin-builds acid from
2297617992sucrose-builds acid from
2297627082trehalose-builds acid from
229765291gelatin-hydrolysis
2297617057cellobiose+builds acid from
2297617634D-glucose+builds acid from
2297616899D-mannitol+builds acid from
2297616988D-ribose+builds acid from
2297617754glycerol+builds acid from
2297628087glycogen+builds acid from
2297617716lactose+builds acid from
2297617306maltose+builds acid from
22976606565hippurate+hydrolysis
2903215963ribitol+carbon source
2903217057cellobiose+carbon source
2903228757fructose+carbon source
2903228260galactose+carbon source
2903217234glucose+carbon source
2903217754glycerol+carbon source
2903217716lactose+carbon source
2903217306maltose+carbon source
2903216634raffinose+carbon source
2903217992sucrose+carbon source
2903227082trehalose+carbon source
2903217632nitrate+reduction
11597717632nitrate+reduction
11597716301nitrite-reduction
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

@refChebi-IDmetaboliteproduction
2297615688acetoinyes
11597735581indoleno
6838035581indoleno

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
22976acid phosphatase-3.1.3.2
22976alkaline phosphatase-3.1.3.1
22976alpha-galactosidase+3.2.1.22
22976alpha-glucosidase+3.2.1.20
22976arginine dihydrolase-3.5.3.6
22976beta-galactosidase+3.2.1.23
22976beta-glucosidase-3.2.1.21
22976beta-glucuronidase+3.2.1.31
22976catalase+1.11.1.6
22976esterase lipase (C 8)-
22976leucine arylamidase+3.4.11.1
22976N-acetyl-beta-glucosaminidase-3.2.1.52
22976nitrate reductase-1.7.99.4
22976pyrazinamidase-3.5.1.B15
22976pyrrolidonyl arylamidase-3.4.19.3
22976urease-3.5.1.5
29032alpha-galactosidase+3.2.1.22
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase+3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)-
68382alkaline phosphatase-3.1.3.1
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase-
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase+3.4.11.5
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase+3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5
115977oxidase-
115977catalase-1.11.1.6
115977urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
115977-----+----++-+++----

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
8143--+/-+-+--+--+-----+/-+-+/-+/--------
8143---+-+--+---------+----------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
8143placenta of sow after abortionChiba PrefectureJapanJPNAsia
61684Porcine placenta,abortionJapanJPNAsia2000
67770Sow's placenta after an abortion
115977Sow, placenta following an abortion

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Urogenital tract
#Host Body Product#Urogenital tract#Abort

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
8143yes2Risk group (German classification)
1159771Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Arcanobacterium abortisuis partial 16S rRNA gene, 16S-23S IGS and partial 23S rRNA IGS, strain DSM 19515FN667627468ena445930
8143Arcanobacterium abortisuis gene for 16S rRNA, partial sequenceAB3051591519ena445930

Genome sequences

  • @ref: 66792
  • description: Trueperella abortisuis DSM 19515
  • accession: 2923491830
  • assembly level: draft
  • database: img
  • NCBI tax ID: 445930

GC content

@refGC-contentmethod
814363.8high performance liquid chromatography (HPLC)
2903263.8

External links

@ref: 8143

culture collection no.: DSM 19515, ATCC BAA 1522, JCM 14813, CCUG 58417, CIP 110059, KCTC 15151

straininfo link

  • @ref: 69901
  • straininfo: 362773

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny19502337Arcanobacterium abortisuis sp. nov., isolated from a placenta of a sow following an abortion.Azuma R, Murakami S, Ogawa A, Okada Y, Miyazaki S, Makino TInt J Syst Evol Microbiol10.1099/ijs.0.004465-02009*Abortion, Veterinary, Actinomycetales Infections/microbiology/*veterinary, Animals, Arcanobacterium/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Female, Molecular Sequence Data, Phenotype, Phylogeny, Placenta/*microbiology, Polymerase Chain Reaction/methods, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species Specificity, Swine, Swine Diseases/*microbiologyGenetics
Phylogeny20926209Characterization of Arcanobacterium abortisuis by phenotypic properties and by sequencing the 16S-23S rDNA intergenic spacer region.Ulbegi-Mohyla H, Hassan AA, Hijazin M, Alber J, Lammler C, Abdulmawjood A, Prenger-Berninghoff E, Weiss R, Zschock MVet Microbiol10.1016/j.vetmic.2010.08.0262010Animals, Arcanobacterium/classification/*genetics/isolation & purification, DNA, Bacterial/genetics, DNA, Intergenic/*genetics, DNA, Ribosomal/genetics, Genotype, Phenotype, RNA, Ribosomal, 16S/genetics, RNA, Ribosomal, 23S/genetics, Sequence Analysis, DNA, Swine/microbiologyGenetics
Phylogeny35131429Development of a loop-mediated isothermal amplification (LAMP) assay for molecular identification of Trueperella abortisuis isolated from pigs.Ahmed MFE, Alssahen M, Lammler C, Foster G, Kreitlow A, Hennig-Pauka I, Plotz M, Abdulmawjood AMol Cell Probes10.1016/j.mcp.2022.1017952022Actinomycetaceae, Animals, *Arcanobacterium/genetics, Female, Male, Molecular Diagnostic Techniques, *Nucleic Acid Amplification Techniques, RNA, Ribosomal, 16S/genetics, Sensitivity and Specificity, Swine

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
8143Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19515)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19515
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
22976A. F. Yassin,H. Hupfer,C. Siering,P. Schumann10.1099/ijs.0.020032-0Comparative chemotaxonomic and phylogenetic studies on the genus Arcanobacterium Collins et al. 1982 emend. Lehnen et al. 2006: proposal for Trueperella gen. nov. and emended description of the genus ArcanobacteriumIJSEM 61: 1265-1274 201120622055
29032Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604125462
33644Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7874
61684Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 58417)https://www.ccug.se/strain?id=58417
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
69901Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID362773.1StrainInfo: A central database for resolving microbial strain identifiers
115977Curators of the CIPCollection of Institut Pasteur (CIP 110059)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110059