Strain identifier

BacDive ID: 2137

Type strain: Yes

Species: Campylobacter hyointestinalis subsp. hyointestinalis

Strain Designation: 80-4577-4

Strain history: CIP <- 1993, NCTC <- 1983, C.J. Gebhart, Minnesota Univ., USA: strain 80-4577-4

NCBI tax ID(s): 198 (species)

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General

@ref: 7784

BacDive-ID: 2137

DSM-Number: 19053

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Campylobacter hyointestinalis subsp. hyointestinalis 80-4577-4 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from pig intestine.

NCBI tax id

  • NCBI tax id: 198
  • Matching level: species

strain history

@refhistory
7784<- CIP <- ATCC <- C. J. Gebhart; 80-4577-4
120029CIP <- 1993, NCTC <- 1983, C.J. Gebhart, Minnesota Univ., USA: strain 80-4577-4

doi: 10.13145/bacdive2137.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter hyointestinalis subsp. hyointestinalis
  • full scientific name: Campylobacter hyointestinalis subsp. hyointestinalis (Gebhart et al. 1985) On et al. 1995

@ref: 7784

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter hyointestinalis subsp. hyointestinalis

full scientific name: Campylobacter hyointestinalis subsp. hyointestinalis (Gebhart et al. 1985) On et al. 1995

strain designation: 80-4577-4

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangementconfidence
23070negative1.2-2.5 µm0.2-0.5 µmrod-shapedyesmonotrichous, polar
69480yes93.286
69480negative99.992
120029negativerod-shapedyes

colony morphology

@refincubation periodtype of hemolysishemolysis abilitycolony sizecolony colorcolony shapemedium used
77841-2 days
230702 daysalpha12.0 mmgreenishcircular5% blood agar
120029

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7784COLUMBIA BLOOD AGAR (DSMZ Medium 429)yeshttps://mediadive.dsmz.de/medium/429Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base
230705% blood agaryes
40776MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
120029Brucella brothyes
120029CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6
121165CIP Medium 24yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=24
121165CIP Medium 92yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=92

culture temp

@refgrowthtypetemperaturerange
7784positivegrowth37mesophilic
23070positivegrowth42.0thermophilic
23070nogrowth25.0mesophilic
40776positivegrowth37mesophilic
46034positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
7784anaerobe
46034microaerophile
120029microaerophile

spore formation

@refspore formationconfidence
23070no
69481no100
69480no99.991

halophily

@refsaltgrowthtested relationconcentration
23070NaClnogrowth>2.0 %
120029NaClnogrowth3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2307017234glucose-fermentation
23070164111h-indol-3-ylacetic acid-hydrolysis
23070606565hippurate-hydrolysis
2307016199urea-hydrolysis
2307017234glucose-oxidation
2307017632nitrate+reduction
2307018212selenite+reduction
120029606565hippurate-hydrolysis
12002917632nitrate+reduction
12002916301nitrite-reduction
6837316199urea-hydrolysis
6837317632nitrate+reduction
68373606565hippurate-hydrolysis
6837330031succinate+assimilation
6837330089acetate+assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis resistantresistance conc.is sensitivesensitivity conc.
23070100147nalidixic acidyesyes32 µg/mL
68373474053cefazolinyesyes224 µg
1200290129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesyesno

metabolite production

@refChebi-IDmetaboliteproduction
6837316136hydrogen sulfideyes
12002935581indoleno

enzymes

@refvalueactivityec
23070catalase+1.11.1.6
23070cytochrome oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68373catalase+1.11.1.6
68373L-aspartate arylamidase-3.4.11.21
68373pyrrolidonyl arylamidase-3.4.19.3
68373esterase-
68373urease-3.5.1.5
120029oxidase-
120029gelatinase-
120029catalase+1.11.1.6
120029gamma-glutamyltransferase+2.3.2.2
120029urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
120029-+++------++--------

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
7784-+---+-+/--+++/-++-++/-+-+/-+
7784-+--+/-+-+/--+/-+-++/--+-+--+
7784-+--------+-++-+----+
7784-+------++-++-+++++

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentlatitudelongitude
7784pig intestineMinnesotaUSAUSANorth America46.3924-94.6362
23070porcine intestine (proliferative enteritis)
46034Porcine intestine,proliferative ileitisMinnesotaUSAUSANorth America
120029Animal, Porcine, intestine with proliferative enteritidis

isolation source categories

Cat1Cat2Cat3
#Infection#Disease
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Gastrointestinal tract

taxonmaps

  • @ref: 69479
  • File name: preview.99_1016.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15775;96_584;97_683;98_793;99_1016&stattab=map
  • Last taxonomy: Campylobacter hyointestinalis subclade
  • 16S sequence: JX912517
  • Sequence Identity:
  • Total samples: 1854
  • soil counts: 16
  • aquatic counts: 23
  • animal counts: 1809
  • plant counts: 6

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
77842Risk group (German classification)
1200292Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Campylobacter hyointestinalis gene for 16S rRNA, partial sequence, strain: ATCC 35217AB453261259ena198
20218Campylobacter hyointestinalis subsp. hyointestinalis strain NCTC11608 16S ribosomal RNA gene, partial sequenceAF0976891423ena91352
20218Campylobacter hyointestinalis subsp. hyointestinalis strain ATCC 35217 16S ribosomal RNA gene, partial sequenceJX9125171438ena91352
20218Campylobacter hyointestinalis 16S ribosomal RNAM650101461ena198
7784Campylobacter hyointestinalis subsp. hyointestinalis strain LMG 7817 16S ribosomal RNA (rrs) gene, partial sequenceDQ1741771344ena91352

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter hyointestinalis subsp. hyointestinalis CCUG 14169GCA_013372145completencbi91352
66792Campylobacter hyointestinalis NCTC11608GCA_900460765contigncbi198
66792Campylobacter hyointestinalis ATCC 35217GCA_900116585scaffoldncbi198
66792Campylobacter hyointestinalis subsp. hyointestinalis DSM 19053GCA_000705275contigncbi91352
66792Campylobacter hyointestinalis strain ATCC 35217198.4wgspatric198
66792Campylobacter hyointestinalis strain NCTC11608198.16wgspatric198
66792Campylobacter hyointestinalis subsp. hyointestinalis strain CCUG 1416991352.23completepatric91352
66792Campylobacter hyointestinalis subsp. hyointestinalis strain DSM 1905391352.4wgspatric91352
66792Campylobacter hyointestinalis hyointestinalis DSM 190532821825124draftimg91352
66792Campylobacter hyointestinalis NCTC 116082811995282draftimg198
66792Campylobacter hyointestinalis ATCC 352172687453784draftimg198

GC content

@refGC-contentmethod
778435
2307035.0thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes92.296yes
flagellatedyes70.498yes
gram-positiveno98.805yes
anaerobicno80.576no
aerobicno97.205yes
halophileno89.082no
spore-formingno94.05yes
thermophileno82.543no
glucose-utilno91.512no
glucose-fermentno87.052no

External links

@ref: 7784

culture collection no.: DSM 19053, ATCC 35217, CCUG 14169, CIP 103750, LMG 7817, NCTC 11608, LMG 6445, CIP 103746

straininfo link

  • @ref: 71765
  • straininfo: 1471

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7784Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19053)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19053
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23070Stephen L. W. On, Buchardt Bloch,Barry Holmes,Bart Hoste,Peter Vandamme10.1099/00207713-45-4-767Campylobacter hyointestinalis subsp. lawsonii subsp. nov., Isolated from the Porcine Stomach, and an Emended Description of Campylobacter hyointestinalisIJSEM 45: 767-774 19957547297
40776Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15577
46034Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 14169)https://www.ccug.se/strain?id=14169
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71765Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID1471.1StrainInfo: A central database for resolving microbial strain identifiers
120029Curators of the CIPCollection of Institut Pasteur (CIP 103746)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103746
121165Curators of the CIPCollection of Institut Pasteur (CIP 103750)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103750