Strain identifier
BacDive ID: 2137
Type strain:
Species: Campylobacter hyointestinalis subsp. hyointestinalis
Strain Designation: 80-4577-4
Strain history: CIP <- 1993, NCTC <- 1983, C.J. Gebhart, Minnesota Univ., USA: strain 80-4577-4
NCBI tax ID(s): 198 (species)
General
@ref: 7784
BacDive-ID: 2137
DSM-Number: 19053
keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative, motile, rod-shaped
description: Campylobacter hyointestinalis subsp. hyointestinalis 80-4577-4 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from pig intestine.
NCBI tax id
- NCBI tax id: 198
- Matching level: species
strain history
@ref | history |
---|---|
7784 | <- CIP <- ATCC <- C. J. Gebhart; 80-4577-4 |
120029 | CIP <- 1993, NCTC <- 1983, C.J. Gebhart, Minnesota Univ., USA: strain 80-4577-4 |
doi: 10.13145/bacdive2137.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter hyointestinalis subsp. hyointestinalis
- full scientific name: Campylobacter hyointestinalis subsp. hyointestinalis (Gebhart et al. 1985) On et al. 1995
@ref: 7784
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter hyointestinalis subsp. hyointestinalis
full scientific name: Campylobacter hyointestinalis subsp. hyointestinalis (Gebhart et al. 1985) On et al. 1995
strain designation: 80-4577-4
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell length | cell width | cell shape | motility | flagellum arrangement | confidence |
---|---|---|---|---|---|---|---|
23070 | negative | 1.2-2.5 µm | 0.2-0.5 µm | rod-shaped | yes | monotrichous, polar | |
69480 | yes | 93.286 | |||||
69480 | negative | 99.992 | |||||
120029 | negative | rod-shaped | yes |
colony morphology
@ref | incubation period | type of hemolysis | hemolysis ability | colony size | colony color | colony shape | medium used |
---|---|---|---|---|---|---|---|
7784 | 1-2 days | ||||||
23070 | 2 days | alpha | 1 | 2.0 mm | greenish | circular | 5% blood agar |
120029 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
7784 | COLUMBIA BLOOD AGAR (DSMZ Medium 429) | yes | https://mediadive.dsmz.de/medium/429 | Name: COLUMBIA BLOOD AGAR (DSMZ Medium 429) Composition: Horse blood 40.0 g/l Columbia agar base |
23070 | 5% blood agar | yes | ||
40776 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
120029 | Brucella broth | yes | ||
120029 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 | |
121165 | CIP Medium 24 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=24 | |
121165 | CIP Medium 92 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=92 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7784 | positive | growth | 37 | mesophilic |
23070 | positive | growth | 42.0 | thermophilic |
23070 | no | growth | 25.0 | mesophilic |
40776 | positive | growth | 37 | mesophilic |
46034 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
7784 | anaerobe |
46034 | microaerophile |
120029 | microaerophile |
spore formation
@ref | spore formation | confidence |
---|---|---|
23070 | no | |
69481 | no | 100 |
69480 | no | 99.991 |
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
23070 | NaCl | no | growth | >2.0 % |
120029 | NaCl | no | growth | 3.5 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23070 | 17234 | glucose | - | fermentation |
23070 | 16411 | 1h-indol-3-ylacetic acid | - | hydrolysis |
23070 | 606565 | hippurate | - | hydrolysis |
23070 | 16199 | urea | - | hydrolysis |
23070 | 17234 | glucose | - | oxidation |
23070 | 17632 | nitrate | + | reduction |
23070 | 18212 | selenite | + | reduction |
120029 | 606565 | hippurate | - | hydrolysis |
120029 | 17632 | nitrate | + | reduction |
120029 | 16301 | nitrite | - | reduction |
68373 | 16199 | urea | - | hydrolysis |
68373 | 17632 | nitrate | + | reduction |
68373 | 606565 | hippurate | - | hydrolysis |
68373 | 30031 | succinate | + | assimilation |
68373 | 30089 | acetate | + | assimilation |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is resistant | resistance conc. | is sensitive | sensitivity conc. |
---|---|---|---|---|---|---|---|
23070 | 100147 | nalidixic acid | yes | yes | 32 µg/mL | ||
68373 | 474053 | cefazolin | yes | yes | 224 µg | ||
120029 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) | yes | yes | no |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68373 | 16136 | hydrogen sulfide | yes |
120029 | 35581 | indole | no |
enzymes
@ref | value | activity | ec |
---|---|---|---|
23070 | catalase | + | 1.11.1.6 |
23070 | cytochrome oxidase | + | 1.9.3.1 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | - | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68373 | catalase | + | 1.11.1.6 |
68373 | L-aspartate arylamidase | - | 3.4.11.21 |
68373 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68373 | esterase | - | |
68373 | urease | - | 3.5.1.5 |
120029 | oxidase | - | |
120029 | gelatinase | - | |
120029 | catalase | + | 1.11.1.6 |
120029 | gamma-glutamyltransferase | + | 2.3.2.2 |
120029 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
120029 | - | + | + | + | - | - | - | - | - | - | + | + | - | - | - | - | - | - | - | - |
API CAM
@ref | URE | NIT | EST | HIP | GGT | TTC | PYRA | ArgA | AspA | PAL | H2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | ERO | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7784 | - | + | - | - | - | + | - | +/- | - | + | + | +/- | + | + | - | + | +/- | + | - | +/- | + |
7784 | - | + | - | - | +/- | + | - | +/- | - | +/- | + | - | + | +/- | - | + | - | + | - | - | + |
7784 | - | + | - | - | - | - | - | - | - | - | + | - | + | + | - | + | - | - | - | - | + |
7784 | - | + | - | - | - | - | - | - | + | + | - | + | + | - | + | + | + | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | geographic location | country | origin.country | continent | latitude | longitude |
---|---|---|---|---|---|---|---|
7784 | pig intestine | Minnesota | USA | USA | North America | 46.3924 | -94.6362 |
23070 | porcine intestine (proliferative enteritis) | ||||||
46034 | Porcine intestine,proliferative ileitis | Minnesota | USA | USA | North America | ||
120029 | Animal, Porcine, intestine with proliferative enteritidis |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Infection | #Disease | |
#Host | #Mammals | #Suidae (Pig,Swine) |
#Host Body-Site | #Gastrointestinal tract |
taxonmaps
- @ref: 69479
- File name: preview.99_1016.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15775;96_584;97_683;98_793;99_1016&stattab=map
- Last taxonomy: Campylobacter hyointestinalis subclade
- 16S sequence: JX912517
- Sequence Identity:
- Total samples: 1854
- soil counts: 16
- aquatic counts: 23
- animal counts: 1809
- plant counts: 6
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
7784 | 2 | Risk group (German classification) |
120029 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Campylobacter hyointestinalis gene for 16S rRNA, partial sequence, strain: ATCC 35217 | AB453261 | 259 | ena | 198 |
20218 | Campylobacter hyointestinalis subsp. hyointestinalis strain NCTC11608 16S ribosomal RNA gene, partial sequence | AF097689 | 1423 | ena | 91352 |
20218 | Campylobacter hyointestinalis subsp. hyointestinalis strain ATCC 35217 16S ribosomal RNA gene, partial sequence | JX912517 | 1438 | ena | 91352 |
20218 | Campylobacter hyointestinalis 16S ribosomal RNA | M65010 | 1461 | ena | 198 |
7784 | Campylobacter hyointestinalis subsp. hyointestinalis strain LMG 7817 16S ribosomal RNA (rrs) gene, partial sequence | DQ174177 | 1344 | ena | 91352 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Campylobacter hyointestinalis subsp. hyointestinalis CCUG 14169 | GCA_013372145 | complete | ncbi | 91352 |
66792 | Campylobacter hyointestinalis NCTC11608 | GCA_900460765 | contig | ncbi | 198 |
66792 | Campylobacter hyointestinalis ATCC 35217 | GCA_900116585 | scaffold | ncbi | 198 |
66792 | Campylobacter hyointestinalis subsp. hyointestinalis DSM 19053 | GCA_000705275 | contig | ncbi | 91352 |
66792 | Campylobacter hyointestinalis strain ATCC 35217 | 198.4 | wgs | patric | 198 |
66792 | Campylobacter hyointestinalis strain NCTC11608 | 198.16 | wgs | patric | 198 |
66792 | Campylobacter hyointestinalis subsp. hyointestinalis strain CCUG 14169 | 91352.23 | complete | patric | 91352 |
66792 | Campylobacter hyointestinalis subsp. hyointestinalis strain DSM 19053 | 91352.4 | wgs | patric | 91352 |
66792 | Campylobacter hyointestinalis hyointestinalis DSM 19053 | 2821825124 | draft | img | 91352 |
66792 | Campylobacter hyointestinalis NCTC 11608 | 2811995282 | draft | img | 198 |
66792 | Campylobacter hyointestinalis ATCC 35217 | 2687453784 | draft | img | 198 |
GC content
@ref | GC-content | method |
---|---|---|
7784 | 35 | |
23070 | 35.0 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 92.296 | yes |
flagellated | yes | 70.498 | yes |
gram-positive | no | 98.805 | yes |
anaerobic | no | 80.576 | no |
aerobic | no | 97.205 | yes |
halophile | no | 89.082 | no |
spore-forming | no | 94.05 | yes |
thermophile | no | 82.543 | no |
glucose-util | no | 91.512 | no |
glucose-ferment | no | 87.052 | no |
External links
@ref: 7784
culture collection no.: DSM 19053, ATCC 35217, CCUG 14169, CIP 103750, LMG 7817, NCTC 11608, LMG 6445, CIP 103746
straininfo link
- @ref: 71765
- straininfo: 1471
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
7784 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19053) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-19053 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
23070 | Stephen L. W. On, Buchardt Bloch,Barry Holmes,Bart Hoste,Peter Vandamme | 10.1099/00207713-45-4-767 | Campylobacter hyointestinalis subsp. lawsonii subsp. nov., Isolated from the Porcine Stomach, and an Emended Description of Campylobacter hyointestinalis | IJSEM 45: 767-774 1995 | 7547297 | |
40776 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15577 | ||||
46034 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 14169) | https://www.ccug.se/strain?id=14169 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68373 | Automatically annotated from API CAM | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
71765 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1471.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120029 | Curators of the CIP | Collection of Institut Pasteur (CIP 103746) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103746 | |||
121165 | Curators of the CIP | Collection of Institut Pasteur (CIP 103750) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103750 |