Strain identifier

BacDive ID: 2135

Type strain: Yes

Species: Campylobacter mucosalis

Strain Designation: FS253/72, 253/72

Strain history: CIP <- 2010, DSMZ <- CCUG <- 1978, NCTC <- G.H.K. Lawson, Edinburgh, Scotland, UK: strain 253/72

NCBI tax ID(s): 202 (species)

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General

@ref: 15884

BacDive-ID: 2135

DSM-Number: 21682

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, motile, animal pathogen

description: Campylobacter mucosalis FS253/72 is an anaerobe, mesophilic, motile animal pathogen that was isolated from porcine small intestine.

NCBI tax id

  • NCBI tax id: 202
  • Matching level: species

strain history

@refhistory
15884<- CCUG <- NCTC <- G. H. K. Lawson, Edinburgh
121165CIP <- 2010, DSMZ <- CCUG <- 1978, NCTC <- G.H.K. Lawson, Edinburgh, Scotland, UK: strain 253/72

doi: 10.13145/bacdive2135.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter mucosalis
  • full scientific name: Campylobacter mucosalis (Lawson et al. 1981 ex Lawson and Rowland 1974) Roop et al. 1985

  • synonyms

    • @ref: 20215
    • synonym: Campylobacter sputorum subsp. mucosalis

@ref: 15884

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter mucosalis

full scientific name: Campylobacter mucosalis (Lawson et al. 1981) Roop et al. 1985

strain designation: FS253/72, 253/72

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes95.693
6948099.997negative
121165yesnegativerod-shaped

colony morphology

@refincubation period
158841-2 days
121165

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
15884COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
15884CHOPPED MEAT MEDIUM (DSMZ Medium 78)yeshttps://mediadive.dsmz.de/medium/78Name: CHOPPED MEAT MEDIUM (DSMZ Medium 78) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l Ethanol 9.5 g/l (optional) K2HPO4 5.0 g/l Yeast extract 5.0 g/l L-Cysteine HCl 0.5 g/l Haemin 0.005 g/l (optional) Resazurin 0.001 g/l Vitamin K3 0.0005 g/l (optional) Vitamin K1 (optional) NaOH (optional) Distilled water
40778MEDIUM 24 - for Campylobacter concisus, C. sputorum and C. mucosalisyesDistilled water make up to (1000.000 ml);Horse blood (100.000 ml);Brainheart infusion agar (52.000 g);Formate solution - M00175 (100.000 ml);Fumaric acid solution- M0176 (100.000 ml)
121165Brucella brothyes

culture temp

@refgrowthtypetemperaturerange
15884positivegrowth37mesophilic
40778positivegrowth37mesophilic
44930positivegrowth37mesophilic
121165positivegrowth30-45
121165nogrowth5psychrophilic
121165nogrowth10psychrophilic
121165nogrowth25mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
15884anaerobe
44930microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.99

halophily

  • @ref: 121165
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
121165606565hippurate-hydrolysis
12116517632nitrate+reduction
12116516301nitrite-reduction
6837378019triphenyltetrazolium chloride-reduction
6837317634D-glucose-assimilation
6837330031succinate-assimilation
6837330089acetate-assimilation
6837317272propionate-assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistant
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg
1211650129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesnoyes

metabolite production

  • @ref: 121165
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
15884catalase-1.11.1.6
15884cytochrome-c oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase-3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68373catalase+1.11.1.6
68373alkaline phosphatase+3.1.3.1
68373L-aspartate arylamidase+3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
121165oxidase-
121165gelatinase-
121165DNase-
121165catalase-1.11.1.6
121165urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44930C12:07.212
    44930C14:09.614
    44930C16:025.516
    44930C12:0 ALDE ?1.510.915
    44930C13:1 at 12-131.512.931
    44930C14:0 3OH/C16:1 ISO I3.115.485
    44930C16:0 3OH1.117.52
    44930C16:1 ω7c2715.819
    44930C18:1 ω7c /12t/9t21.817.824
    44930C18:2 ω6,9c/C18:0 ANTE1.817.724
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
121165-++-------++---+----

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
15884---+----+++------+--+
15884+++-----++----------

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dategeographic locationisolation date
15884porcine small intestineUnited KingdomGBREurope
44930Porcine small intestine1972
121165Animal, Porcine, small intestineUnited KingdomGBREuropeEdinburgh, Scotland1975

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Suidae (Pig,Swine)
#Host Body-Site#Gastrointestinal tract#Small intestine

taxonmaps

  • @ref: 69479
  • File name: preview.99_2638.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15775;96_858;97_1677;98_2043;99_2638&stattab=map
  • Last taxonomy: Campylobacter mucosalis subclade
  • 16S sequence: JX912523
  • Sequence Identity:
  • Total samples: 4994
  • soil counts: 30
  • aquatic counts: 51
  • animal counts: 4909
  • plant counts: 4

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
15884yes2Risk group (German classification)
1211652Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Campylobacter mucosalis strain ATCC 43264 16S ribosomal RNA gene, partial sequenceJX9125231433ena202
20218Campylobacter mucosalis 16S ribosomal RNA sequenceL069781457ena202
15884Campylobacter mucosalis strain ATCC 43264 16S ribosomal RNA (rrs) gene, partial sequenceDQ1741731339ena202

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter mucosalis ATCC 43264GCA_013372205completencbi202
66792Campylobacter mucosalis ATCC 43264GCA_012978755contigncbi202
66792Campylobacter mucosalis DSM 21682GCA_000705255contigncbi202
66792Campylobacter mucosalis strain ATCC 43264202.15completepatric202
66792Campylobacter mucosalis strain ATCC 43264202.14wgspatric202
66792Campylobacter mucosalis strain DSM 21682202.4wgspatric202
66792Campylobacter mucosalis DSM 216822609460082draftimg202

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes89.076no
flagellatedyes62.182no
gram-positiveno98.752no
anaerobicyes51.487no
aerobicno97.584yes
halophileno72.211no
spore-formingno94.692no
thermophileno91.437yes
glucose-utilno87.613no
glucose-fermentno88.618no

External links

@ref: 15884

culture collection no.: DSM 21682, ATCC 43264, CCUG 6822, CIP 103750, NCTC 11000, LMG 6448, LMG 6449

straininfo link

  • @ref: 71763
  • straininfo: 302787

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
15884Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21682)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21682
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40778Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15582
44930Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 6822)https://www.ccug.se/strain?id=6822
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71763Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID302787.1StrainInfo: A central database for resolving microbial strain identifiers
121165Curators of the CIPCollection of Institut Pasteur (CIP 103750)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103750