Strain identifier

BacDive ID: 2134

Type strain: Yes

Species: Campylobacter fetus subsp. venerealis

Strain Designation: X/161/5

Strain history: CIP <- 1968, NCTC, Vibrio fetus <- R. Park: strain X/161/5

NCBI tax ID(s): 983328 (strain), 32020 (subspecies)

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General

@ref: 7718

BacDive-ID: 2134

DSM-Number: 18826

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, motile, rod-shaped, animal pathogen

description: Campylobacter fetus subsp. venerealis X/161/5 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from heifer vaginal mucus.

NCBI tax id

NCBI tax idMatching level
32020subspecies
983328strain

strain history

@refhistory
7718<- CIP; CIP 68.29 <- NCTC; NCTC 10354 <- R. Park;
119340CIP <- 1968, NCTC, Vibrio fetus <- R. Park: strain X/161/5

doi: 10.13145/bacdive2134.20250331.9.3

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter fetus subsp. venerealis
  • full scientific name: Campylobacter fetus subsp. venerealis (Florent 1959) Véron and Chatelain 1973 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Vibrio fetus subsp. venerealis

@ref: 7718

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter fetus subsp. venerealis

full scientific name: Campylobacter fetus subsp. venerealis (Florent 1959) Véron and Chatelain 1973

strain designation: X/161/5

type strain: yes

Morphology

cell morphology

@refgram staincell shapemotilityconfidence
119340negativerod-shapedyes
125438negative97.455
125439negative99.1

colony morphology

@refincubation period
77181-2 days
119340

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7718COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
38052MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
119340Brucella brothyes
119340CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperature
7718positivegrowth37
38052positivegrowth37

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
7718microaerophile
119340microaerophile

spore formation

@refspore formationconfidence
125438no94.863
125439no98.5

halophily

  • @ref: 119340
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316947citrate-assimilation
6837325115malate-assimilation
6837316199urea-hydrolysis
1193404853esculin-hydrolysis
11934017632nitrate+reduction
11934016301nitrite+reduction
6837330089acetate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.is resistant
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg
1193400129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)yesnoyes

metabolite production

@refChebi-IDmetaboliteproduction
6837316136hydrogen sulfideno
11934035581indoleno

enzymes

@refvalueactivityec
7718catalase+1.11.1.6
7718cytochrome-c oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382alpha-glucosidase+3.2.1.20
68382beta-glucosidase-3.2.1.21
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382trypsin-3.4.21.4
68382alpha-chymotrypsin-3.4.21.1
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382lipase (C 14)-
68382leucine arylamidase+3.4.11.1
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
119340oxidase+
119340gelatinase-
119340urease-3.5.1.5
68382alpha-galactosidase-3.2.1.22
68382esterase lipase (C 8)+
68373catalase+1.11.1.6
68373L-aspartate arylamidase-3.4.11.21
68373L-arginine arylamidase-
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
68373urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119340-+++-+----++---+----

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
7718-+---+/-------+---+/----+
7718-+-+-----+----------+
7718-+------------------+
7718-++--+--------------+
7718--++----------------+
7718-+-+-+--------------+
7718-+-+-+/---------------+
7718--+/------------------+
7718-+------------------+
7718-+---+-----++-------+

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentlatitudelongitudeisolation date
7718heifer vaginal mucusUnited KingdomGBREurope54-2
119340Heifer, vaginal mucus1968

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Urogenital tract#Vagina
#Host#Mammals#Bovinae (Cow, Cattle)
#Host Body Product#Fluids

taxonmaps

  • @ref: 69479
  • File name: preview.99_1046.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15775;96_584;97_683;98_820;99_1046&stattab=map
  • Last taxonomy: Campylobacter fetus subclade
  • 16S sequence: JX912514
  • Sequence Identity:
  • Total samples: 9513
  • soil counts: 178
  • aquatic counts: 254
  • animal counts: 9037
  • plant counts: 44

Safety information

risk assessment

@refpathogenicity animalbiosafety levelbiosafety level comment
7718yes2Risk group (German classification)
1193402Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Campylobacter fetus subsp. venerealis NCTC 10354 strain ATCC 19438 16S ribosomal RNA gene, partial sequenceJX9125141437nuccore983328
20218Campylobacter fetus subsp. venerealis NCTC 10354 strain ATCC 19438 16S ribosomal RNA gene, complete sequenceL146331448nuccore196
20218Campylobacter fetus subsp. venerealis NCTC 10354 strain ATCC 19438 16S ribosomal RNA (16S rRNA) gene, complete sequenceM650111448nuccore196
7718Campylobacter fetus subsp. venerealis NCTC 10354 16S ribosomal RNA (rrs) gene, partial sequenceDQ1741311343nuccore983328

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter fetus subsp. venerealis NCTC 10354GCA_008271385completencbi983328
66792Campylobacter fetus subsp. venerealis NCTC 10354GCA_000222425chromosomencbi983328
66792Campylobacter fetus subsp. venerealis NCTC 10354983328.6completepatric983328
66792Campylobacter fetus subsp. venerealis NCTC 10354983328.4wgspatric983328
66792Campylobacter fetus venerealis X/161/5, NCTC 103542597489882draftimg983328

Genome-based predictions

predictions

@refmodeltraitdescriptionpredictionconfidencetraining_data
125438gram-positivegram-positivePositive reaction to Gram-stainingno97.455no
125438anaerobicanaerobicAbility to grow under anoxygenic conditions (including facultative anaerobes)no76.337yes
125438aerobicaerobicAbility to grow under oxygenic conditions (including facultative aerobes)no79.553no
125438spore-formingspore-formingAbility to form endo- or exosporesno94.863no
125438thermophilethermophilicAbility to grow at temperatures above or equal to 45°Cno88.989no
125438motile2+flagellatedAbility to perform flagellated movementyes61.519no
125439BacteriaNetspore_formationAbility to form endo- or exosporesno98.5
125439BacteriaNetmotilityAbility to perform movementno64
125439BacteriaNetgram_stainReaction to gram-stainingnegative99.1
125439BacteriaNetoxygen_toleranceOxygenic conditions needed for growthanaerobe75.4

External links

@ref: 7718

culture collection no.: DSM 18826, ATCC 19438, CIP 68.29, JCM 2528, NCTC 10354, CCUG 33899, LMG 6443, NCDO 1876

straininfo link

  • @ref: 71762
  • straininfo: 389396

literature

  • topic: Genetics
  • Pubmed-ID: 21952544
  • title: Complete genome sequence of type strain Campylobacter fetus subsp. venerealis NCTC 10354T.
  • authors: Stynen AP, Lage AP, Moore RJ, Rezende AM, de Resende VD, Ruy Pde C, Daher N, Resende Dde M, de Almeida SS, Soares Sde C, de Abreu VA, Rocha AA, dos Santos AR, Barbosa EG, Costa DF, Dorella FA, Miyoshi A, de Lima AR, Campos FD, de Sa PG, Lopes TS, Rodrigues RM, Carneiro AR, Leao T, Cerdeira LT, Ramos RT, Silva A, Azevedo V, Ruiz JC
  • journal: J Bacteriol
  • DOI: 10.1128/JB.05854-11
  • year: 2011
  • mesh: Animals, Base Sequence, Campylobacter Infections/microbiology/*veterinary, Campylobacter fetus/*genetics/isolation & purification, Cattle, Cattle Diseases/*microbiology, Female, *Genome, Bacterial, Male, Molecular Sequence Data
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7718Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18826)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18826
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38052Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/10389
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71762Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389396.1StrainInfo: A central database for resolving microbial strain identifiers
119340Curators of the CIPCollection of Institut Pasteur (CIP 68.29)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2068.29
125438Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann10.1101/2024.08.12.607695Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets
125439Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardyhttps://github.com/GenomeNet/deepGdeepG: Deep Learning for Genome Sequence Data. R package version 0.3.1