Strain identifier
BacDive ID: 2134
Type strain:
Species: Campylobacter fetus subsp. venerealis
Strain Designation: X/161/5
Strain history: CIP <- 1968, NCTC, Vibrio fetus <- R. Park: strain X/161/5
NCBI tax ID(s): 983328 (strain), 32020 (subspecies)
General
@ref: 7718
BacDive-ID: 2134
DSM-Number: 18826
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, animal pathogen
description: Campylobacter fetus subsp. venerealis X/161/5 is a microaerophile, mesophilic, Gram-negative animal pathogen that was isolated from heifer vaginal mucus.
NCBI tax id
NCBI tax id | Matching level |
---|---|
983328 | strain |
32020 | subspecies |
strain history
@ref | history |
---|---|
7718 | <- CIP; CIP 68.29 <- NCTC; NCTC 10354 <- R. Park; |
119340 | CIP <- 1968, NCTC, Vibrio fetus <- R. Park: strain X/161/5 |
doi: 10.13145/bacdive2134.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter fetus subsp. venerealis
- full scientific name: Campylobacter fetus subsp. venerealis (Florent 1959) Véron and Chatelain 1973 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Vibrio fetus subsp. venerealis
@ref: 7718
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter fetus subsp. venerealis
full scientific name: Campylobacter fetus subsp. venerealis (Florent 1959) Véron and Chatelain 1973
strain designation: X/161/5
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 99.991 | ||
119340 | negative | rod-shaped | yes |
colony morphology
@ref | incubation period |
---|---|
7718 | 1-2 days |
119340 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
7718 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
38052 | MEDIUM 6 - Columbia agar with 10 % horse blood | yes | Distilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml) | |
119340 | Brucella broth | yes | ||
119340 | CIP Medium 6 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
7718 | positive | growth | 37 | mesophilic |
38052 | positive | growth | 37 | mesophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
7718 | microaerophile |
119340 | microaerophile |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 90 |
69480 | no | 99.999 |
halophily
- @ref: 119340
- salt: NaCl
- growth: no
- tested relation: growth
- concentration: 3.5 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
119340 | 4853 | esculin | - | hydrolysis |
119340 | 17632 | nitrate | + | reduction |
119340 | 16301 | nitrite | + | reduction |
68373 | 16199 | urea | - | hydrolysis |
68373 | 17634 | D-glucose | - | assimilation |
68373 | 30089 | acetate | - | assimilation |
68373 | 25115 | malate | - | assimilation |
68373 | 16947 | citrate | - | assimilation |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. | is resistant |
---|---|---|---|---|---|---|
68373 | 48923 | erythromycin | yes | yes | 14 µg | |
68373 | 474053 | cefazolin | yes | yes | 224 µg | |
68373 | 100147 | nalidixic acid | yes | yes | 84 µg | |
119340 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) | yes | no | yes |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68373 | 16136 | hydrogen sulfide | no |
119340 | 35581 | indole | no |
enzymes
@ref | value | activity | ec |
---|---|---|---|
7718 | catalase | + | 1.11.1.6 |
7718 | cytochrome-c oxidase | + | 1.9.3.1 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68373 | catalase | + | 1.11.1.6 |
68373 | L-aspartate arylamidase | - | 3.4.11.21 |
68373 | L-arginine arylamidase | - | |
68373 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68373 | gamma-glutamyltransferase | - | 2.3.2.2 |
68373 | urease | - | 3.5.1.5 |
119340 | oxidase | + | |
119340 | gelatinase | - | |
119340 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
119340 | - | + | + | + | - | + | - | - | - | - | + | + | - | - | - | + | - | - | - | - |
API CAM
@ref | URE | NIT | EST | HIP | GGT | TTC | PYRA | ArgA | AspA | PAL | H2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | ERO | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
7718 | - | + | - | - | - | +/- | - | - | - | - | - | - | + | - | - | - | +/- | - | - | - | + |
7718 | - | + | - | + | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | + |
7718 | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
7718 | - | + | + | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
7718 | - | - | + | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
7718 | - | + | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
7718 | - | + | - | + | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
7718 | - | - | +/- | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
7718 | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | latitude | longitude | isolation date |
---|---|---|---|---|---|---|---|
7718 | heifer vaginal mucus | United Kingdom | GBR | Europe | 54 | -2 | |
119340 | Heifer, vaginal mucus | 1968 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host Body-Site | #Urogenital tract | #Vagina |
#Host | #Mammals | #Bovinae (Cow, Cattle) |
#Host Body Product | #Fluids |
taxonmaps
- @ref: 69479
- File name: preview.99_1046.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15775;96_584;97_683;98_820;99_1046&stattab=map
- Last taxonomy: Campylobacter fetus subclade
- 16S sequence: JX912514
- Sequence Identity:
- Total samples: 9513
- soil counts: 178
- aquatic counts: 254
- animal counts: 9037
- plant counts: 44
Safety information
risk assessment
@ref | pathogenicity animal | biosafety level | biosafety level comment |
---|---|---|---|
7718 | yes | 2 | Risk group (German classification) |
119340 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Campylobacter fetus subsp. venerealis NCTC 10354 strain ATCC 19438 16S ribosomal RNA gene, partial sequence | JX912514 | 1437 | ena | 983328 |
20218 | Campylobacter fetus 16S ribosomal RNA | L14633 | 1448 | ena | 196 |
20218 | Campylobacter fetus veneralis 16S ribosomal RNA | M65011 | 1448 | ena | 196 |
7718 | Campylobacter fetus subsp. venerealis NCTC 10354 16S ribosomal RNA (rrs) gene, partial sequence | DQ174131 | 1343 | ena | 983328 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Campylobacter fetus subsp. venerealis NCTC 10354 | GCA_008271385 | complete | ncbi | 983328 |
66792 | Campylobacter fetus subsp. venerealis NCTC 10354 | GCA_000222425 | chromosome | ncbi | 983328 |
66792 | Campylobacter fetus subsp. venerealis NCTC 10354 | 983328.6 | complete | patric | 983328 |
66792 | Campylobacter fetus subsp. venerealis NCTC 10354 | 983328.4 | wgs | patric | 983328 |
66792 | Campylobacter fetus venerealis X/161/5, NCTC 10354 | 2597489882 | draft | img | 983328 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 90 | no |
motile | yes | 92.011 | no |
flagellated | yes | 65.907 | no |
gram-positive | no | 98.614 | no |
anaerobic | no | 81.274 | no |
aerobic | no | 95.855 | yes |
halophile | no | 90.441 | no |
spore-forming | no | 94.902 | no |
glucose-util | no | 90.862 | no |
thermophile | no | 84.433 | yes |
glucose-ferment | no | 88.719 | no |
External links
@ref: 7718
culture collection no.: DSM 18826, ATCC 19438, CIP 68.29, JCM 2528, NCTC 10354, CCUG 33899, LMG 6443, NCDO 1876
straininfo link
- @ref: 71762
- straininfo: 389396
literature
- topic: Genetics
- Pubmed-ID: 21952544
- title: Complete genome sequence of type strain Campylobacter fetus subsp. venerealis NCTC 10354T.
- authors: Stynen AP, Lage AP, Moore RJ, Rezende AM, de Resende VD, Ruy Pde C, Daher N, Resende Dde M, de Almeida SS, Soares Sde C, de Abreu VA, Rocha AA, dos Santos AR, Barbosa EG, Costa DF, Dorella FA, Miyoshi A, de Lima AR, Campos FD, de Sa PG, Lopes TS, Rodrigues RM, Carneiro AR, Leao T, Cerdeira LT, Ramos RT, Silva A, Azevedo V, Ruiz JC
- journal: J Bacteriol
- DOI: 10.1128/JB.05854-11
- year: 2011
- mesh: Animals, Base Sequence, Campylobacter Infections/microbiology/*veterinary, Campylobacter fetus/*genetics/isolation & purification, Cattle, Cattle Diseases/*microbiology, Female, *Genome, Bacterial, Male, Molecular Sequence Data
- topic2: Enzymology
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
7718 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18826) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-18826 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
38052 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/10389 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68373 | Automatically annotated from API CAM | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
71762 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID389396.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
119340 | Curators of the CIP | Collection of Institut Pasteur (CIP 68.29) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2068.29 |