Strain identifier
BacDive ID: 2130
Type strain:
Species: Campylobacter sputorum
Strain Designation: S-17
Strain history: CIP <- 1994, CCUG <- 1980, L.V. Holdeman, VPI: strain S-17
NCBI tax ID(s): 206 (species)
General
@ref: 3970
BacDive-ID: 2130
DSM-Number: 10535
keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, rod-shaped
description: Campylobacter sputorum S-17 is a microaerophile, mesophilic, rod-shaped bacterium that was isolated from human oral cavity.
NCBI tax id
- NCBI tax id: 206
- Matching level: species
strain history
@ref | history |
---|---|
3970 | <- CCUG <- L.V. Holdeman, VPI USA; S-17 |
67771 | <- CCUG <- LV Holdeman, VPI S-17 |
123286 | CIP <- 1994, CCUG <- 1980, L.V. Holdeman, VPI: strain S-17 |
doi: 10.13145/bacdive2130.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Epsilonproteobacteria
- order: Campylobacterales
- family: Campylobacteraceae
- genus: Campylobacter
- species: Campylobacter sputorum
- full scientific name: Campylobacter sputorum (Prévot 1940) Véron and Chatelain 1973 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Vibrio sputorum
@ref: 3970
domain: Bacteria
phylum: Proteobacteria
class: Epsilonproteobacteria
order: Campylobacterales
family: Campylobacteraceae
genus: Campylobacter
species: Campylobacter sputorum subsp. sputorum
full scientific name: Campylobacter sputorum subsp. sputorum (Prévot 1940) Véron and Chatelain 1973 emend. Roop et al. 1986
strain designation: S-17
type strain: yes
Morphology
cell morphology
@ref | cell shape | gram stain | motility |
---|---|---|---|
67771 | rod-shaped | ||
67771 | negative | ||
123286 | rod-shaped | negative | yes |
colony morphology
@ref | incubation period |
---|---|
45233 | 2 days |
123286 |
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3970 | SEMISOLID BRUCELLA BROTH (DSMZ Medium 703) | yes | https://mediadive.dsmz.de/medium/703 | Name: SEMISOLID BRUCELLA BROTH (DSMZ Medium 703) Composition: Casein peptone 10.0 g/l Bacto peptone 10.0 g/l NaCl 5.0 g/l Yeast extract 2.0 g/l Agar 1.6 g/l D-Glucose 1.0 g/l Distilled water |
40777 | MEDIUM 24 - for Campylobacter concisus, C. sputorum and C. mucosalis | yes | Distilled water make up to (1000.000 ml);Horse blood (100.000 ml);Brainheart infusion agar (52.000 g);Formate solution - M00175 (100.000 ml);Fumaric acid solution- M0176 (100.000 ml) | |
123286 | CIP Medium 24 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=24 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3970 | positive | growth | 37 | mesophilic |
40777 | positive | growth | 37 | mesophilic |
45233 | positive | growth | 37 | mesophilic |
67771 | positive | growth | 37 | mesophilic |
123286 | positive | growth | 25-41 | |
123286 | no | growth | 5 | psychrophilic |
123286 | no | growth | 10 | psychrophilic |
123286 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
3970 | microaerophile |
45233 | microaerophile |
67771 | anaerobe |
halophily
- @ref: 123286
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 3.5 %
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
123286 | 606565 | hippurate | + | hydrolysis |
123286 | 17632 | nitrate | + | reduction |
123286 | 16301 | nitrite | + | reduction |
68373 | 17632 | nitrate | - | reduction |
68373 | 17634 | D-glucose | - | assimilation |
68373 | 30031 | succinate | - | assimilation |
68373 | 30089 | acetate | - | assimilation |
68373 | 17272 | propionate | - | assimilation |
68373 | 25115 | malate | - | assimilation |
68373 | 16947 | citrate | - | assimilation |
antibiotic resistance
@ref | ChEBI | metabolite | is antibiotic | is sensitive | sensitivity conc. |
---|---|---|---|---|---|
68373 | 48923 | erythromycin | yes | yes | 14 µg |
68373 | 474053 | cefazolin | yes | yes | 224 µg |
68373 | 100147 | nalidixic acid | yes | yes | 84 µg |
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68373 | 16136 | hydrogen sulfide | yes |
123286 | 35581 | indole | no |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | + | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68373 | alkaline phosphatase | - | 3.1.3.1 |
68373 | L-arginine arylamidase | - | |
68373 | pyrrolidonyl arylamidase | - | 3.4.19.3 |
68373 | gamma-glutamyltransferase | - | 2.3.2.2 |
123286 | oxidase | + | |
123286 | gelatinase | - | |
123286 | catalase | - | 1.11.1.6 |
123286 | gamma-glutamyltransferase | - | 2.3.2.2 |
123286 | urease | - | 3.5.1.5 |
fatty acid profile
fatty acids
@ref fatty acid percentage ECL 45233 C12:0 0.5 12 45233 C14:0 22.1 14 45233 C16:0 26.7 16 45233 C18:0 0.5 18 45233 C12:0 ALDE ? 1.3 10.915 45233 C13:0 ISO 2OH 0.5 13.814 45233 C13:1 at 12-13 1.9 12.931 45233 C14:0 3OH/C16:1 ISO I 4.3 15.485 45233 C16:0 3OH 3 17.52 45233 C16:1 ω7c 8.1 15.819 45233 C18:1 ω7c /12t/9t 28.9 17.824 45233 C18:2 ω6,9c/C18:0 ANTE 1.6 17.724 45233 unknown 14.503 0.6 14.503 - type of FA analysis: whole cell analysis
- method/protocol: CCUG
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
123286 | - | - | + | + | - | + | - | - | - | - | + | + | - | - | - | + | - | - | - | - |
API CAM
@ref | URE | NIT | EST | HIP | GGT | TTC | PYRA | ArgA | AspA | PAL | H2S | GLU | SUT | NAL | CFZ | ACE | PROP | MLT | CIT | ERO | CAT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3970 | + | - | - | + | - | +/- | - | - | + | - | + | - | - | - | - | - | - | - | - | - | + |
45233 | - | - | + | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent |
---|---|---|---|---|
3970 | human oral cavity | USA | USA | North America |
45233 | Human oral cavity | USA | USA | North America |
67771 | From human oral cavity | USA | USA | North America |
123286 | Human, Oral cavity | Brazil | BRA | Middle and South America |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Human | |
#Host Body-Site | #Oral cavity and airways | |
#Host Body-Site | #Oral cavity and airways | #Mouth |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
3970 | 2 | Risk group (German classification) |
123286 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Campylobacter sputorum strain ATCC 33562 16S ribosomal RNA gene, partial sequence | JF747610 | 1469 | ena | 206 |
20218 | Campylobacter sputorum biovar sputorum strain ATCC 35980 16S ribosomal RNA gene, partial sequence | JX912526 | 1434 | ena | 32024 |
20218 | Campylobacter sputorum strain LMG 7795 16S ribosomal RNA (rrs) gene, partial sequence | DQ174149 | 1572 | ena | 206 |
20218 | C.sputorum sputorum (LMG 7795) 16S rRNA gene | X67775 | 1695 | ena | 32024 |
67771 | Campylobacter sputorum biovar sputorum strain biovar sputorum;LMG 7795 16S ribosomal RNA, partial sequence | NR_044839 | 1695 | nuccore | 32024 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Campylobacter sputorum subsp. sputorum LMG 7795 | GCA_008245005 | complete | ncbi | 32024 |
66792 | Campylobacter sputorum subsp. sputorum CCUG 9728 | GCA_008802035 | contig | ncbi | 32024 |
66792 | Campylobacter sputorum biovar sputorum strain CCUG 9728 | 32024.7 | wgs | patric | 32024 |
66792 | Campylobacter sputorum biovar sputorum strain LMG 7795 | 32024.6 | complete | patric | 32024 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
motile | yes | 87.303 | no |
flagellated | yes | 57.671 | no |
gram-positive | no | 98.819 | no |
anaerobic | yes | 52.861 | no |
aerobic | no | 97.106 | yes |
halophile | no | 80.705 | no |
spore-forming | no | 95.665 | no |
glucose-util | no | 88.812 | no |
thermophile | no | 60.575 | yes |
glucose-ferment | no | 85.453 | no |
External links
@ref: 3970
culture collection no.: LMG 7795, LMG 6450, KCTC 15215, DSM 10535, ATCC 35980, CCUG 9728, CIP 103749, NCTC 11528, KCTC 2682, VPI S-17
straininfo link
- @ref: 71758
- straininfo: 1563
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3970 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 10535) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-10535 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
40777 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/15581 | ||||
45233 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 9728) | https://www.ccug.se/strain?id=9728 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||||
68373 | Automatically annotated from API CAM | |||||
68382 | Automatically annotated from API zym | |||||
71758 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID1563.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
123286 | Curators of the CIP | Collection of Institut Pasteur (CIP 103749) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103749 |