Strain identifier

BacDive ID: 2128

Type strain: Yes

Species: Campylobacter curvus

Strain history: CIP <- 1994, CCUG <- A.C.R. Tanner, VPI: strain 9584, Wolinella curva <- R.M. Smibert <- D.W. Lambe

NCBI tax ID(s): 1121268 (strain), 200 (species)

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General

@ref: 2649

BacDive-ID: 2128

DSM-Number: 6644

keywords: genome sequence, 16S sequence, Bacteria, anaerobe, mesophilic, Gram-negative

description: Campylobacter curvus CCUG 13146 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from human jaw abscess.

NCBI tax id

NCBI tax idMatching level
200species
1121268strain

strain history

@refhistory
2649<- ATCC <- A. Tanner, VPI 9584 ("Wolinella curva") <- R.M. Smibert <- D.W. Lambe
118824CIP <- 1994, CCUG <- A.C.R. Tanner, VPI: strain 9584, Wolinella curva <- R.M. Smibert <- D.W. Lambe

doi: 10.13145/bacdive2128.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter curvus
  • full scientific name: Campylobacter curvus (Tanner et al. 1984) Vandamme et al. 1991

  • synonyms

    • @ref: 20215
    • synonym: Wolinella curva

@ref: 2649

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter curvus

full scientific name: Campylobacter curvus (Tanner et al. 1984) Vandamme et al. 1991

type strain: yes

Morphology

cell morphology

@refgram stainconfidencecell shape
69480negative99.996
118824negativerod-shaped

colony morphology

  • @ref: 118824

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2649BTU MEDIUM (DSMZ Medium 413)yeshttps://mediadive.dsmz.de/medium/413Name: BTU MEDIUM (DSMZ Medium 413) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l Na-formiate 1.8 g/l Na-fumarate 1.8 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Resazurin 0.001 g/l Vitamin K1 NaOH Distilled water
2649CAMPYLOBACTER RECTUS MEDIUM (DSMZ Medium 338)yeshttps://mediadive.dsmz.de/medium/338Name: CAMPYLOBACTER RECTUS MEDIUM (DSMZ Medium 338) Composition: Yeast extract 11.0 g/l Trypticase 9.0 g/l Na-fumarate 3.0 g/l Beef extract 3.0 g/l NaCl 2.0 g/l Na-formate 2.0 g/l Na2HPO4 0.4 g/l Na2CO3 0.25 g/l Haemin 0.005 g/l Resazurin 0.001 g/l Distilled water
40775MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
2649COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
118824CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
2649positivegrowth37mesophilic
40775positivegrowth37mesophilic
45899positivegrowth37mesophilic
118824positivegrowth37-41
118824nogrowth5psychrophilic
118824nogrowth25mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
2649anaerobe
45899anaerobe
45899microaerophile
118824microaerophile

spore formation

@refspore formationconfidence
69481no100
69480no99.998

halophily

  • @ref: 118824
  • salt: NaCl
  • growth: no
  • tested relation: growth
  • concentration: 3.5 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
118824606565hippurate-hydrolysis
11882417632nitrate+reduction
11882416301nitrite+reduction
6837316199urea-hydrolysis
6837317632nitrate-reduction
6837378019triphenyltetrazolium chloride-reduction
6837317634D-glucose-assimilation
6837330031succinate+assimilation
6837317272propionate-assimilation
6837316947citrate-assimilation

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg

metabolite production

@refChebi-IDmetaboliteproduction
6837316136hydrogen sulfideyes
11882435581indoleno

enzymes

@refvalueactivityec
2649catalase-1.11.1.6
2649cytochrome-c oxidase+1.9.3.1
68373alkaline phosphatase+3.1.3.1
68373L-aspartate arylamidase+3.4.11.21
68373gamma-glutamyltransferase-2.3.2.2
68373esterase+
68373urease-3.5.1.5
118824oxidase+
118824catalase+1.11.1.6
118824urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    45899C10:00.510
    45899C12:013.412
    45899C14:021.314
    45899C16:018.716
    45899C13:0 ISO 2OH1.113.814
    45899C14:0 3OH/C16:1 ISO I6.515.485
    45899C16:1 ω5c0.515.908
    45899C16:1 ω7c16.215.819
    45899C17:1 ISO I/C16:0 DMA1.716.481
    45899C18:1 ω7c /12t/9t15.917.824
    45899C18:2 ω6,9c/C18:0 ANTE1.217.724
    45899Unidentified0.914.954
    45899Unidentified2.117.534
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
2649--+---+/-++++-++-+/--+/---+
2649--++/----+/-+++-+--------

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentisolation date
2649human jaw abscess
45899Human alveolar (or jaw) abscess
118824Human, Jaw abscessAtlanta, GeorgiaUnited States of AmericaUSANorth America1984

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Other#Abscess
#Infection#Patient
#Host Body-Site#Other#Head

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
26492Risk group (German classification)
1188242Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Campylobacter curvus strain ATCC 35224 16S ribosomal RNA gene, partial sequenceJX9125071434ena200
20218Campylobacter curvus, complete 16S ribosomal RNAL043131413ena200
2649Campylobacter curvus strain ATCC 35224 16S ribosomal RNA (rrs) gene, partial sequenceDQ1741651479ena200

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter curvus ATCC 35224GCA_013372125completencbi200
66792Campylobacter curvus ATCC 35224GCA_012978875contigncbi200
66792Campylobacter curvus DSM 6644GCA_000376325contigncbi1121268
66792Campylobacter curvus DSM 66441121268.3wgspatric1121268
66792Campylobacter curvus strain ATCC 35224200.7wgspatric200
66792Campylobacter curvus strain ATCC 35224200.17completepatric200
66792Campylobacter curvus DSM 66442517572248draftimg1121268
66792Campylobacter curvus strain FDAARGOS_1547200.23completepatric200
66792Campylobacter curvus strain FDAARGOS_1547200.22completepatric200

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes91.396no
flagellatedyes62.297no
gram-positiveno98.297no
anaerobicno50no
aerobicno98.084yes
halophileno84.413no
spore-formingno94.524no
thermophileno84.199yes
glucose-utilno93.384yes
glucose-fermentno87.378no

External links

@ref: 2649

culture collection no.: CCUG 13146, NCTC 11649, LMG 7609, DSM 6644, ATCC 35224, DSM 7255, VPI 9584, CIP 103747

straininfo link

  • @ref: 71756
  • straininfo: 1446

literature

topicPubmed-IDtitleauthorsjournalyearmeshtopic2DOI
Enzymology1303324Analysis of cell surface antigens of Campylobacter rectus.Kaneko TBull Tokyo Dent Coll1992Adult, Antibodies, Bacterial/blood, Antibodies, Monoclonal, Antigens, Bacterial/analysis/*immunology, Antigens, Surface/analysis, Campylobacter/*immunology, Electrophoresis, Polyacrylamide Gel, Enzyme-Linked Immunosorbent Assay, Humans, Immunoblotting, Lipopolysaccharides/analysis, Microscopy, Immunoelectron, Middle Aged, Periodontitis/*immunology/*microbiologyPathogenicity
Phylogeny34624709Campylobacter anatolicus sp. nov., a novel member of the genus Campylobacter isolated from feces of Anatolian Ground Squirrel (Spermophilus xanthoprymnus) in Turkey.Aydin F, Abay S, Kayman T, Karakaya E, Mustak HK, Mustak IB, Bilgen N, Goncuoglu M, Duzler A, Guran O, Sahin O, Saticioglu IBSyst Appl Microbiol2021Animals, Bacterial Typing Techniques, *Campylobacter/genetics, DNA, Bacterial/genetics, Fatty Acids/analysis, Feces, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, *Sciuridae, Sequence Analysis, DNA, TurkeyTranscriptome10.1016/j.syapm.2021.126265

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2649Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 6644)https://www.dsmz.de/collection/catalogue/details/culture/DSM-6644
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40775Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15579
45899Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 13146)https://www.ccug.se/strain?id=13146
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68373Automatically annotated from API CAM
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
71756Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID1446.1StrainInfo: A central database for resolving microbial strain identifiers
118824Curators of the CIPCollection of Institut Pasteur (CIP 103747)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103747