Strain identifier

BacDive ID: 2127

Type strain: Yes

Species: Campylobacter rectus

Culture col. no.: DSM 3260, ATCC 33238, CCUG 20446, NCTC 11489, FDC 371

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 5.0 (current version):
version 4.1:
version 4.0:
version 3.0:
version 2.1:
version 2.0:
version 1.0:
version 5.0 (current version)

General

@ref: 1331

BacDive-ID: 2127

DSM-Number: 3260

keywords: anaerobe, Bacteria, 16S sequence, genome sequence, mesophilic

description: Campylobacter rectus DSM 3260 is an anaerobe, mesophilic bacterium that was isolated from human peridontal pocket.

strain history: <- ATCC <- A.C.R. Tanner, FDC 371

doi: 10.13145/bacdive2127.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter rectus
  • full scientific name: Campylobacter rectus (Tanner et al. 1981) Vandamme et al. 1991
  • synonyms

    • @ref: 20215
    • synonym: Wolinella recta

@ref: 1331

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter rectus

full scientific name: Campylobacter rectus (Tanner et al. 1981) Vandamme et al. 1991

type strain: yes

Morphology

colony morphology

@refincubation period
13313-7 days
471383 days

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1331CAMPYLOBACTER RECTUS MEDIUM (DSMZ Medium 338), anaerobicyeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium338.pdf
38145MEDIUM 92 - for Campylobacter rectus and Campylobacter mucosalisyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml);Growth supplement (4.000 ml);Formate solution - M00175 (0.250 ml)

culture temp

@refgrowthtypetemperaturerange
1331positivegrowth37mesophilic
38145positivegrowth37mesophilic
47138positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
1331anaerobe
47138anaerobe

enzymes

  • @ref: 1331
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

fatty acid profile

  • @reffatty acidpercentageECL
    47138C10:00.510
    47138C12:018.612
    47138C14:013.114
    47138C16:026.116
    47138C18:00.418
    47138C12:0 ALDE ?1.210.915
    47138C13:0 ISO 2OH1.113.814
    47138C13:1 at 12-130.412.931
    47138C14:0 3OH/C16:1 ISO I5.215.485
    47138C16:0 3OH1.117.52
    47138C16:1 ω5c0.315.908
    47138C16:1 ω7c1215.819
    47138C18:1 ω7c /12t/9t15.117.824
    47138C18:2 ω6,9c/C18:0 ANTE4.417.724
    47138Unidentified0.613.927
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG
  • @reffatty acidpercentageECL
    47138C12:014.212
    47138C14:011.714
    47138C15:00.415
    47138C16:029.316
    47138C18:00.718
    47138C12:0 ALDE ?0.810.915
    47138C13:0 ISO 2OH0.913.814
    47138C13:1 at 12-130.412.931
    47138C14:0 3OH/C16:1 ISO I4.215.485
    47138C16:0 3OH117.52
    47138C16:1 ω5c0.215.908
    47138C16:1 ω7c12.615.819
    47138C18:1 ω7c /12t/9t19.117.824
    47138C18:2 ω6,9c/C18:0 ANTE4.117.724
    47138Unidentified0.613.931
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
47138--+-------+---------

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
47138--+--+--+------------
1331-++--+--+-+----------
1331--+----+/-+-----------+
1331-------+++----------+

Isolation, sampling and environmental information

isolation

@refsample typesampling dategeographic locationcountryorigin.countrycontinent
1331human peridontal pocket
47138Human periodontal pocket1974BostonUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Host#Human
#Host Body-Site#Oral cavity and airways#Periodontal pocket

Safety information

risk assessment

  • @ref: 1331
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Campylobacter rectus strain ATCC 33238 16S ribosomal RNA gene, partial sequenceJX9125241434ena203
20218Campylobacter rectus, complete 16S ribosomal RNAL043171459ena203
1331Campylobacter rectus strain CCUG 20446B 16S ribosomal RNA (rrs) gene, partial sequenceDQ1741691339ena203

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter rectus ATCC 33238GCA_004803795completencbi203
66792Campylobacter rectus OH2158GCA_003859865contigncbi203
66792Campylobacter rectus RM3267553218.4wgspatric553218
66792Campylobacter rectus strain OH2158203.53wgspatric203

GC content

  • @ref: 1331
  • GC-content: 42.0-46.0

External links

@ref: 1331

culture collection no.: DSM 3260, ATCC 33238, CCUG 20446 B, NCTC 11489, FDC 371

straininfo link

@refpassport
20218http://www.straininfo.net/strains/6466
20218http://www.straininfo.net/strains/6463

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1331Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3260)https://www.dsmz.de/collection/catalogue/details/culture/DSM-3260
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38145Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15580
47138Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 20446 B)https://www.ccug.se/strain?id=20446
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)