Strain identifier

BacDive ID: 2120

Type strain: Yes

Species: Campylobacter fetus

Strain Designation: mouton 1

Strain history: CIP <- 1953, R. Vinzent: strain mouton 1

NCBI tax ID(s): 196 (species)

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General

@ref: 2002

BacDive-ID: 2120

DSM-Number: 5361

keywords: genome sequence, 16S sequence, Bacteria, microaerophile, mesophilic, Gram-negative, motile, rod-shaped

description: Campylobacter fetus mouton 1 is a microaerophile, mesophilic, Gram-negative bacterium that was isolated from sheep fetus brain.

NCBI tax id

  • NCBI tax id: 196
  • Matching level: species

strain history

@refhistory
2002<- CCUG <- NCTC <- R. Chatelain <- B. Vincent
416781953, R. Vinzent: strain mouton 1
119341CIP <- 1953, R. Vinzent: strain mouton 1

doi: 10.13145/bacdive2120.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Epsilonproteobacteria
  • order: Campylobacterales
  • family: Campylobacteraceae
  • genus: Campylobacter
  • species: Campylobacter fetus
  • full scientific name: Campylobacter fetus (Smith and Taylor 1919) Sebald and Véron 1963 (Approved Lists 1980)

  • synonyms

    • @ref: 20215
    • synonym: Vibrio fetus

@ref: 2002

domain: Bacteria

phylum: Proteobacteria

class: Epsilonproteobacteria

order: Campylobacterales

family: Campylobacteraceae

genus: Campylobacter

species: Campylobacter fetus subsp. fetus

full scientific name: Campylobacter fetus subsp. fetus (Smith and Taylor 1919) Véron and Chatelain 1973

strain designation: mouton 1

type strain: yes

Morphology

cell morphology

  • @ref: 119341
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: yes

colony morphology

@reftype of hemolysisincubation period
2002gamma1-2 days
119341

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
2002COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
41678MEDIUM 6 - Columbia agar with 10 % horse bloodyesDistilled water make up to (1000.000 ml);Columbia agar (39.000 g);Horseblood (100.000 ml)
119341CIP Medium 6yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=6

culture temp

@refgrowthtypetemperaturerange
2002positivegrowth37mesophilic
41678positivegrowth37mesophilic
44931positivegrowth37mesophilic
119341positivegrowth30-41
119341nogrowth5psychrophilic
119341nogrowth15psychrophilic
119341nogrowth45thermophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
2002microaerophile
44931microaerophile
119341microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
11934117632nitrate+reduction
11934116301nitrite+reduction
6837316199urea-hydrolysis
6837317632nitrate+reduction
68373606565hippurate-hydrolysis
6837330089acetate-assimilation
6837325115malate-assimilation

antibiotic resistance

  • @ref: 68373
  • ChEBI: 474053
  • metabolite: cefazolin
  • is antibiotic: yes
  • is sensitive: yes
  • sensitivity conc.: 224 µg

metabolite production

@refChebi-IDmetaboliteproduction
6837316136hydrogen sulfideno
11934135581indoleno

enzymes

@refvalueactivityec
2002catalase+1.11.1.6
2002cytochrome-c oxidase+1.9.3.1
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68373catalase+1.11.1.6
68373L-aspartate arylamidase-3.4.11.21
68373pyrrolidonyl arylamidase-3.4.19.3
68373esterase-
68373urease-3.5.1.5
119341oxidase+
119341catalase+1.11.1.6
119341urease-3.5.1.5

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    44931C14:09.714
    44931C16:023.616
    44931C12:0 ALDE ?2.110.915
    44931C13:1 at 12-13212.931
    44931C14:0 3OH/C16:1 ISO I12.415.485
    44931C16:0 3OH617.52
    44931C16:1 ω7c15.715.819
    44931C18:1 ω7c /12t/9t27.517.824
    44931unknown 14.5030.914.503
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
119341-+++-+----++---+----

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
2002-+---+------++/-------+
2002-+---+-+----++------+
2002-+--+/-+/--+-+--++/------+/-
2002-+---+-+----++--+/----+
2002-+---+-+/-----++/---+/----
2002-+---+-+------------+
2002-+---+/---------------+
2002-+---+/-------++------+
2002-+---+-+---+++----+-+

Isolation, sampling and environmental information

isolation

@refsample type
2002sheep fetus brain
44931Sheep fetus brain
119341Animal, Sheep fetus, brain

isolation source categories

Cat1Cat2Cat3
#Host#Mammals#Caprinae (Sheep/Goat)
#Host Body-Site#Organ#Brain

taxonmaps

  • @ref: 69479
  • File name: preview.99_1046.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_15775;96_584;97_683;98_820;99_1046&stattab=map
  • Last taxonomy: Campylobacter fetus subclade
  • 16S sequence: JX912508
  • Sequence Identity:
  • Total samples: 9513
  • soil counts: 178
  • aquatic counts: 254
  • animal counts: 9037
  • plant counts: 44

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
20022Risk group (German classification)
1193412Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Campylobacter fetus subsp. fetus strain ATCC 27374 16S ribosomal RNA gene, partial sequenceJX9125081437ena32019
20218Campylobacter fetus, complete 16S ribosomal RNAL043141461ena196
20218Campylobacter fetus fetus 16S ribosomal RNAM650121461ena196
20218Campylobacter fetus fetus (VC78) 16S ribosomal RNA, 5' segmentM92311375ena196
20218Campylobacter fetus fetus (VC78) 16S ribosomal RNA, middle segmentM92312298ena196
20218Campylobacter fetus fetus (VC78) 16S ribosomal RNA, 3' segmentM92313307ena196
2002Campylobacter fetus subsp. fetus strain ATCC 27374 16S ribosomal RNA (rrs) gene, partial sequenceDQ1741271343ena32019

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Campylobacter fetus subsp. fetus NCTC10842GCA_900475935completencbi32019
66792Campylobacter fetus subsp. fetus CCUG 6823 ATGCA_008693125contigncbi32019
66792Campylobacter fetus subsp. fetus ATCC 27374GCA_001816265contigncbi32019
66792Campylobacter fetus subsp. fetus strain ATCC 2737432019.46wgspatric32019
66792Campylobacter fetus subsp. fetus strain CCUG 6823 AT32019.64wgspatric32019
66792Campylobacter fetus subsp. fetus strain NCTC1084232019.50completepatric32019
66792Campylobacter fetus fetus NCTC 108422844479891completeimg196

GC content

  • @ref: 2002
  • GC-content: 33.9
  • method: thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
flagellatedyes66.571no
gram-positiveno98.871no
anaerobicno84.055yes
aerobicno96.598no
halophileno90.148no
spore-formingno95.235no
thermophileno79.381yes
glucose-utilno90.87no
motileyes92.691no
glucose-fermentno88.298no

External links

@ref: 2002

culture collection no.: CCUG 6823 A, DSM 5361, ATCC 27374, CCUG 6823, CIP 5396, LMG 6442, NCTC 10842, CIP 53.96, JCM 2527

straininfo link

  • @ref: 71752
  • straininfo: 389261

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny4008624Biochemical and genetic characteristics of atypical Campylobacter fetus subsp. fetus strains isolated from humans in the United States.Edmonds P, Patton CM, Barrett TJ, Morris GK, Steigerwalt AG, Brenner DJJ Clin Microbiol10.1128/jcm.21.6.936-940.19851985Campylobacter Infections/*microbiology, Campylobacter fetus/*classification/genetics/physiology, DNA, Bacterial/genetics, Humans, Microbial Sensitivity Tests, Nucleic Acid Hybridization, PhenotypePathogenicity
Genetics7590179Genome map of Campylobacter fetus subsp. fetus ATCC 27374.Salama SM, Newnham E, Chang N, Taylor DEFEMS Microbiol Lett10.1016/0378-1097(95)00316-w1995Base Sequence, Campylobacter fetus/*genetics, DNA, Bacterial/genetics, Deoxyribonucleases, Type II Site-Specific/metabolism, Electrophoresis, Gel, Pulsed-Field, Genes, Bacterial, *Genome, Bacterial, Molecular Sequence Data, Nucleic Acid Hybridization, Polymerase Chain Reaction, *Restriction MappingEnzymology
Enzymology9056011Cloning and nucleotide sequence of the gyrA gene from Campylobacter fetus subsp. fetus ATCC 27374 and characterization of ciprofloxacin-resistant laboratory and clinical isolates.Taylor DE, Chau ASAntimicrob Agents Chemother10.1128/AAC.41.3.6651997Amino Acid Sequence, Anti-Infective Agents/*pharmacology, Base Sequence, Campylobacter Infections/microbiology, Campylobacter fetus/enzymology/*genetics, Chromosome Mapping, Ciprofloxacin/*pharmacology, Cloning, Molecular, DNA Topoisomerases, Type II/*genetics, Drug Resistance, Microbial, Genes, Bacterial/*genetics, Humans, Molecular Sequence Data, Mutation, Nucleic Acid HybridizationPathogenicity
Pathogenicity21406364Eleutherine americana: a candidate for the control of Campylobacter species.Sirirak T, Voravuthikunchai SPPoult Sci10.3382/ps.2010-011662011Animals, Campylobacter/*drug effects/isolation & purification, Campylobacter Infections/drug therapy/microbiology/*veterinary, *Chickens, Gastrointestinal Diseases/drug therapy/microbiology/*veterinary, Humans, Microbial Sensitivity Tests/veterinary, Plant Extracts/*pharmacology, Plants, Medicinal/*chemistry, Poultry Diseases/drug therapy/*microbiologyEnzymology
Genetics27979934Complete Genome Sequence of Type Strain Campylobacter fetus subsp. fetus ATCC 27374.Oliveira LM, Resende DM, Dorneles EM, Horacio EC, Alves FL, Goncalves LO, Tavares GS, Stynen AP, Lage AP, Ruiz JCGenome Announc10.1128/genomeA.01344-162016
31223498Differentiation of Campylobacter fetus Subspecies by Proteotyping.Emele MF, Karg M, Hotzel H, Bloois LG, Gross U, Bader O, Zautner AEEur J Microbiol Immunol (Bp)10.1556/1886.2019.000062019
Genetics34962980Phenotypic and genetic analyses of two Campylobacter fetus isolates from a patient with relapsed prosthetic valve endocarditis.Lynch CT, Buttimer C, Epping L, O'Connor J, Walsh N, McCarthy C, O'Brien D, Vaughan C, Semmler T, Bolton D, Coffey A, Lucey BPathog Dis10.1093/femspd/ftab0552022Bacterial Typing Techniques, Campylobacter fetus/*classification/*genetics/isolation & purification, Endocarditis, Bacterial/*diagnosis/*etiology, Genome, Bacterial, Genomics, Heart Valve Prosthesis/*adverse effects, Humans, MutationPhylogeny

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
2002Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 5361)https://www.dsmz.de/collection/catalogue/details/culture/DSM-5361
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41678Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/16334
44931Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 6823 A)https://www.ccug.se/strain?id=6823
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68373Automatically annotated from API CAM
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71752Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID389261.1StrainInfo: A central database for resolving microbial strain identifiers
119341Curators of the CIPCollection of Institut Pasteur (CIP 53.96)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2053.96