Strain identifier

BacDive ID: 21

Type strain: Yes

Species: Acetobacter senegalensis

Strain Designation: CWBI-B418

Strain history: <- B. Ndoye, Centre Wallon de Biol. Industrielle, Univ. Liège, Belgium; CWBI-B418

NCBI tax ID(s): 1307918 (strain), 446692 (species)

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General

@ref: 7760

BacDive-ID: 21

DSM-Number: 18889

keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, Gram-negative, motile, coccus-shaped, colony-forming

description: Acetobacter senegalensis CWBI-B418 is an obligate aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from mango fruit Mangifera indica L..

NCBI tax id

NCBI tax idMatching level
1307918strain
446692species

strain history

  • @ref: 7760
  • history: <- B. Ndoye, Centre Wallon de Biol. Industrielle, Univ. Liège, Belgium; CWBI-B418

doi: 10.13145/bacdive21.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Rhodospirillales
  • family: Acetobacteraceae
  • genus: Acetobacter
  • species: Acetobacter senegalensis
  • full scientific name: Acetobacter senegalensis Ndoye et al. 2007

@ref: 7760

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Rhizobiales

family: Acetobacteraceae

genus: Acetobacter

species: Acetobacter senegalensis

full scientific name: Acetobacter senegalensis Ndoye et al. 2007

strain designation: CWBI-B418

type strain: yes

Morphology

cell morphology

  • @ref: 23236
  • gram stain: negative
  • cell length: 1.2-2.0 µm
  • cell width: 0.8 µm
  • cell shape: coccus-shaped
  • motility: yes

colony morphology

  • @ref: 23236
  • colony size: 0.6 mm
  • colony color: beige, opaque
  • colony shape: circular
  • incubation period: 1 day
  • medium used: medium 13 agar

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7760YPM MEDIUM (DSMZ Medium 360)yeshttps://mediadive.dsmz.de/medium/360Name: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water
23236medium 13 agaryes2.5 % D-mannitol, 0.5 % yeast extract, 0.3 %, peptone, 1.5 % agar
23236YGMyes

culture temp

@refgrowthtypetemperaturerange
7760positivegrowth35mesophilic
23236positiveoptimum35mesophilic
23236growth35mesophilic
23236positivegrowth28-40

Physiology and metabolism

tolerance

  • @ref: 23236
  • compound: Ethanol
  • percentage: 10

oxygen tolerance

  • @ref: 23236
  • oxygen tolerance: obligate aerobe

spore formation

  • @ref: 23236
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2323617306maltose-carbon source
2323617790methanol-carbon source
2323616236ethanol+carbon source
2323617754glycerol+carbon source
2323628938ammonium+nitrogen source

metabolite production

@refChebi-IDmetaboliteproduction
23236174265-dehydro-D-gluconateno
23236168082-dehydro-D-gluconateyes

enzymes

@refvalueactivityec
23236catalase+1.11.1.6
23236cytochrome oxidase+1.9.3.1

Isolation, sampling and environmental information

isolation

  • @ref: 7760
  • sample type: mango fruit Mangifera indica L.
  • host species: Mangifera indica
  • geographic location: Casamance
  • country: Senegal
  • origin.country: SEN
  • continent: Africa

isolation source categories

  • Cat1: #Host Body-Site
  • Cat2: #Plant
  • Cat3: #Fruit (Seed)

taxonmaps

  • @ref: 69479
  • File name: preview.99_3086.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_827;98_961;99_3086&stattab=map
  • Last taxonomy: Acetobacter tropicalis
  • 16S sequence: AM748710
  • Sequence Identity:
  • Total samples: 421
  • soil counts: 101
  • aquatic counts: 25
  • animal counts: 218
  • plant counts: 77

Safety information

risk assessment

  • @ref: 7760
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Acetobacter senegalensis partial 16S rRNA gene, type strain LMG 23690TAM7487101444ena446692
20218Acetobacter senegalensis partial 16S rRNA gene, strain LMG 23690HG4244241444ena446692
7760Acetobacter senegalensis strain CWBI-B418 16S ribosomal RNA gene, partial sequenceAY8830361386ena446692

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Acetobacter senegalensis LMG 23690GCA_001580995contigncbi446692
66792Acetobacter senegalensis strain LMG 23690446692.4wgspatric446692
66792Acetobacter senegalensis LMG 236902728368907draftimg446692

GC content

@refGC-contentmethod
776056.0
2323656.00high performance liquid chromatography (HPLC)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno95.672yes
anaerobicno99.221yes
halophileno93.766no
spore-formingno94.752yes
glucose-utilyes84.978no
aerobicyes92.022yes
flagellatedno97.697no
thermophileno97.685yes
motileno85.939yes
glucose-fermentno90.523no

External links

@ref: 7760

culture collection no.: DSM 18889, LMG 23690

straininfo link

  • @ref: 69705
  • straininfo: 138992

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17625197Acetobacter senegalensis sp. nov., a thermotolerant acetic acid bacterium isolated in Senegal (sub-Saharan Africa) from mango fruit (Mangifera indica L.).Ndoye B, Cleenwerck I, Engelbeen K, Dubois-Dauphin R, Guiro AT, Van Trappen S, Willems A, Thonart PInt J Syst Evol Microbiol10.1099/ijs.0.64678-02007Acetic Acid/*metabolism, Acetobacter/*classification/*isolation & purification/physiology, Aerobiosis, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Hot Temperature, Locomotion, Mangifera/*microbiology, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Senegal, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, TemperatureStress
Proteome30984138Effect of Sequential Acclimation to Various Carbon Sources on the Proteome of Acetobacter senegalensis LMG 23690(T) and Its Tolerance to Downstream Process Stresses.Shafiei R, Leprince P, Sombolestani AS, Thonart P, Delvigne FFront Microbiol10.3389/fmicb.2019.006082019Stress
Phylogeny34662265Acetobacter garciniae sp. nov., an acetic acid bacterium isolated from fermented mangosteen peel in Thailand.Yukphan P, Charoenyingcharoen P, Kingcha Y, Likhitrattanapisal S, Muangham S, Tanasupawat S, Yamada YInt J Syst Evol Microbiol10.1099/ijsem.0.0050522021Acetic Acid, *Acetobacter/classification/isolation & purification, Bacterial Typing Techniques, Base Composition, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fermented Foods/*microbiology, Fruit/microbiology, *Garcinia mangostana/microbiology, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, ThailandTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7760Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18889)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18889
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
23236Bassirou Ndoye, Ilse Cleenwerck, Katrien Engelbeen, Robin Dubois-Dauphin, Amadou Tidiane Guiro, Stefanie Van Trappen, Anne Willems, Phillipe Thonart10.1099/ijs.0.64678-0Acetobacter senegalensis sp. nov., a thermotolerant acetic acid bacterium isolated in Senegal (sub-Saharan Africa) from mango fruit (Mangifera indica L.)IJSEM 57: 1576-1581 200717625197
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69705Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID138992.1StrainInfo: A central database for resolving microbial strain identifiers