Strain identifier

BacDive ID: 207

Type strain: No

Species: Mobiluncus holmesii

Strain Designation: V125

Strain history: <- R. Hammann <- R. Durieux, V125

NCBI tax ID(s): 144178 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1211

BacDive-ID: 207

DSM-Number: 2711

keywords: genome sequence, Bacteria, anaerobe, mesophilic, Gram-positive

description: Mobiluncus holmesii V125 is an anaerobe, mesophilic, Gram-positive bacterium that was isolated from human vagina.

NCBI tax id

  • NCBI tax id: 144178
  • Matching level: species

strain history

  • @ref: 1211
  • history: <- R. Hammann <- R. Durieux, V125

doi: 10.13145/bacdive207.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Mobiluncus
  • species: Mobiluncus holmesii
  • full scientific name: Mobiluncus holmesii (Spiegel and Roberts 1984) Nouioui et al. 2018
  • synonyms

    @refsynonym
    20215Falcivibrio vaginalis
    20215Mobiluncus curtisii subsp. holmesii

@ref: 1211

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Mobiluncus

species: Mobiluncus holmesii

full scientific name: Mobiluncus holmesii (Spiegel and Roberts 1984) Nouioui et al. 2018

strain designation: V125

type strain: no

Morphology

cell morphology

  • @ref: 69480
  • gram stain: positive
  • confidence: 100

colony morphology

@refincubation period
12111-2 days
480163 days

Culture and growth conditions

culture medium

  • @ref: 1211
  • name: FALCIVIBRIO MEDIUM (DSMZ Medium 301)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/301
  • composition: Name: FALCIVIBRIO MEDIUM (DSMZ Medium 301) Composition: L-Cysteine 0.3 g/l Resazurin 0.001 g/l Wilkins-Chalgren-Anaerobe-Broth Sterile serum

culture temp

@refgrowthtypetemperaturerange
1211positivegrowth37mesophilic
48016positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen toleranceconfidence
1211anaerobe
48016anaerobe
69480anaerobe99.209

spore formation

@refspore formationconfidence
69481no100
69480no100

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6837316199urea-hydrolysis
6837317632nitrate+reduction
68373606565hippurate-hydrolysis
6837378019triphenyltetrazolium chloride+reduction
6837317634D-glucose-assimilation
6837330031succinate-assimilation
6837330089acetate-assimilation
6837317272propionate-assimilation
6837325115malate-assimilation
6837316947citrate-assimilation
6838016199urea-hydrolysis
6838029016arginine+hydrolysis
6838016024D-mannose-fermentation
6838016634raffinose+fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

antibiotic resistance

@refChEBImetaboliteis antibioticis sensitivesensitivity conc.
6837348923erythromycinyesyes14 µg
68373474053cefazolinyesyes224 µg
68373100147nalidixic acidyesyes84 µg

metabolite production

@refChebi-IDmetaboliteproduction
6837316136hydrogen sulfideno
6838035581indoleno

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase+3.2.1.22
68382naphthol-AS-BI-phosphohydrolase-
68382acid phosphatase-3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)+
68382esterase (C 4)+
68382alkaline phosphatase-3.1.3.1
68380serine arylamidase-
68380glutamyl-glutamate arylamidase-
68380histidine arylamidase+
68380glycin arylamidase+
68380alanine arylamidase+3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase+3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380alpha-arabinosidase-3.2.1.55
68380beta-glucosidase-3.2.1.21
68380alpha-glucosidase+3.2.1.20
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase+3.5.3.6
68380urease-3.5.1.5
68373catalase-1.11.1.6
68373alkaline phosphatase+3.1.3.1
68373L-aspartate arylamidase+3.4.11.21
68373L-arginine arylamidase+
68373pyrrolidonyl arylamidase-3.4.19.3
68373gamma-glutamyltransferase-2.3.2.2
68373esterase+
68373urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
48016--++-+------++-+----

API CAM

@refURENITESTHIPGGTTTCPYRAArgAAspAPALH2SGLUSUTNALCFZACEPROPMLTCITEROCAT
48016-++--+-+++-----------

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
48016-+++-+-----+-----+++++-++++--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
1211human vaginaFranceFRAEurope
48016Human vagina,vaginitisFranceFRAEuropeVilleneuve-St.Georges

isolation source categories

Cat1Cat2Cat3
#Host Body-Site#Urogenital tract#Vagina
#Host#Human#Female

Safety information

risk assessment

  • @ref: 1211
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Mobiluncus curtisii ATCC 43063GCA_000196535completencbi548479
66792Mobiluncus curtisii ATCC 43063548479.6completepatric548479
66792Mobiluncus curtisii strain FDAARGOS_11282051.56completepatric2051
66792Mobiluncus curtisii ATCC 43063648028043completeimg548479

GC content

  • @ref: 1211
  • GC-content: 53.9

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
motileyes69.423no
flagellatedno77.718no
gram-positiveyes70.636no
anaerobicyes95.406no
aerobicno97.361yes
halophileno93.079no
spore-formingno93.806no
thermophileno61.531no
glucose-utilyes67.901yes
glucose-fermentyes82.525no

External links

@ref: 1211

culture collection no.: DSM 2711, ATCC 43063, CCUG 24716

straininfo link

  • @ref: 69890
  • straininfo: 2810

Reference

@idauthorscataloguedoi/urltitle
1211Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2711)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2711
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
48016Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 24716)https://www.ccug.se/strain?id=24716
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68373Automatically annotated from API CAM
68380Automatically annotated from API rID32A
68382Automatically annotated from API zym
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
69890Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID2810.1StrainInfo: A central database for resolving microbial strain identifiers