Strain identifier

BacDive ID: 2038

Type strain: Yes

Species: Cupriavidus metallidurans

Strain Designation: CH34

Strain history: <- H.G. Schlegel <- M. Mergeay, strain CH34 (Ralstonia eutropha)

NCBI tax ID(s): 119219 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 1235

BacDive-ID: 2038

DSM-Number: 2839

keywords: mesophilic, Bacteria, 16S sequence, genome sequence

description: Cupriavidus metallidurans CH34 is a mesophilic bacterium that was isolated from decantation tank of zink factory.

NCBI tax id

  • NCBI tax id: 119219
  • Matching level: species

strain history: <- H.G. Schlegel <- M. Mergeay, strain CH34 (Ralstonia eutropha)

doi: 10.13145/bacdive2038.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Cupriavidus
  • species: Cupriavidus metallidurans
  • full scientific name: Cupriavidus metallidurans (Goris et al. 2001) Vandamme and Coenye 2004
  • synonyms

    @refsynonym
    20215Wautersia metallidurans
    20215Ralstonia metallidurans

@ref: 1235

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Cupriavidus

species: Cupriavidus metallidurans

full scientific name: Cupriavidus metallidurans (Goris et al. 2001) Vandamme and Coenye 2004

strain designation: CH34

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
1235MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81)yeshttps://bacmedia.dsmz.de/medium/81Name: MINERAL MEDIUM FOR CHEMOLITHOTROPHIC GROWTH (H-3) (DSMZ Medium 81) Composition: Agar 20.1005 g/l Na2HPO4 x 2 H2O 2.91457 g/l KH2PO4 2.31156 g/l NH4Cl 1.00503 g/l MgSO4 x 7 H2O 0.502512 g/l Ferric ammonium citrate 0.0502513 g/l CaCl2 x 2 H2O 0.0100503 g/l NaVO3 x H2O 0.00502512 g/l Calcium pantothenate 0.00251256 g/l Pyridoxine hydrochloride 0.00251256 g/l Nicotinic acid 0.00251256 g/l Thiamine-HCl x 2 H2O 0.00251256 g/l H3BO3 0.00150754 g/l CoCl2 x 6 H2O 0.00100503 g/l Riboflavin 0.000502513 g/l ZnSO4 x 7 H2O 0.000502513 g/l MnCl2 x 4 H2O 0.000150754 g/l Na2MoO4 x 2 H2O 0.000150754 g/l NiCl2 x 6 H2O 0.000100503 g/l CuCl2 x 2 H2O 5.02513e-05 g/l Vitamin B12 5.02513e-05 g/l Folic acid 1.00503e-05 g/l Biotin 5.02513e-06 g/l Distilled water
1235NUTRIENT AGAR (DSMZ Medium 1)yeshttps://bacmedia.dsmz.de/medium/1Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
40692MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
1235positivegrowth30mesophilic
40692positivegrowth30mesophilic

Isolation, sampling and environmental information

isolation

  • @ref: 1235
  • sample type: decantation tank of zink factory
  • country: Belgium
  • origin.country: BEL
  • continent: Europe

isolation source categories

Cat1Cat2Cat3
#Engineered#Built environment#Container (Reservoir)
#Engineered#Industrial#Engineered product
#Engineered#Industrial#Plant (Factory)

Safety information

risk assessment

  • @ref: 1235
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Ralstonia sp. CH34 16S rRNA gene, strain CH34Y108241493ena266264
20218Cupriavidus metallidurans strain CIP 107179 16S ribosomal RNA gene, partial sequenceEU0241611315ena119219
20218Cupriavidus metallidurans gene for 16S ribosomal RNA, strain: DSM 2839D879991462ena119219
20218Cupriavidus metallidurans gene for 16S rRNA, partial sequence, strain: NBRC 102507AB6818411457ena119219

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Cupriavidus metallidurans CH34 CH34GCA_000196015completencbi266264
66792Cupriavidus metallidurans CH34266264.41plasmidpatric266264
66792Cupriavidus metallidurans CH34266264.9completepatric266264
66792Cupriavidus metallidurans CH34266264.42plasmidpatric266264
66792Cupriavidus metallidurans CH34266264.43plasmidpatric266264
66792Cupriavidus metallidurans CH34266264.44plasmidpatric266264
66792Cupriavidus metallidurans CH34266264.40plasmidpatric266264
66792Cupriavidus metallidurans CH34637000230completeimg266264

External links

@ref: 1235

culture collection no.: DSM 2839, LMG 1195

straininfo link

@refpassport
20218http://www.straininfo.net/strains/2870
20218http://www.straininfo.net/strains/2868

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny11594608Classification of metal-resistant bacteria from industrial biotopes as Ralstonia campinensis sp. nov., Ralstonia metallidurans sp. nov. and Ralstonia basilensis Steinle et al. 1998 emend.Goris J, De Vos P, Coenye T, Hoste B, Janssens D, Brim H, Diels L, Mergeay M, Kersters K, Vandamme PInt J Syst Evol Microbiol10.1099/00207713-51-5-17732001Bacterial Proteins/chemistry, Base Composition, Betaproteobacteria/*classification/*drug effects/metabolism, DNA, Ribosomal/analysis, *Drug Resistance, Bacterial, Electrophoresis, Polyacrylamide Gel, Fatty Acids/analysis, *Industrial Microbiology, Metals, Heavy/*pharmacology, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAEnzymology
Phylogeny15545472Taxonomy of the genus Cupriavidus: a tale of lost and found.Vandamme P, Coenye TInt J Syst Evol Microbiol10.1099/ijs.0.63247-02004Bacterial Proteins/analysis/isolation & purification, Base Composition, Burkholderiaceae/*classification/genetics/physiology, DNA, Bacterial/chemistry/isolation & purification, DNA, Ribosomal/chemistry/isolation & purification, Genes, rRNA/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Proteome/analysis/isolation & purification, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNAEnzymology
Metabolism17386670Methods for extracting biochemical information from bacterial Raman spectra: an explorative study on Cupriavidus metallidurans.De Gelder J, De Gussem K, Vandenabeele P, De Vos P, Moens LAnal Chim Acta10.1016/j.aca.2006.12.0502007Acetyl Coenzyme A/chemistry, Bacteria/*metabolism, Chemistry Techniques, Analytical/*methods, Citric Acid/chemistry, Citric Acid Cycle, Cupriavidus/*metabolism, Models, Chemical, Phenylalanine/chemistry, Spectrum Analysis, Raman/*methods, Tyrosine/chemistry

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
1235Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 2839)https://www.dsmz.de/collection/catalogue/details/culture/DSM-2839
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40692Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/4586
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)