Strain identifier
BacDive ID: 2
Type strain:
Species: Acetobacter aceti
Strain Designation: L 40
Strain history: CIP <- 1988, NCIB <- 1954, W. Werhoeven <- J. Frateur: strain L 40
NCBI tax ID(s): 887700 (strain), 435 (species)
General
@ref: 1402
BacDive-ID: 2
DSM-Number: 3508
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Acetobacter aceti L 40 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from alcohol turned to vinegar.
NCBI tax id
NCBI tax id | Matching level |
---|---|
887700 | strain |
435 | species |
strain history
@ref | history |
---|---|
1402 | <- NCIB <- M.E. Arends |
67770 | NCIB 8621 <-- W. Verhoeven <-- J. Frateur. |
115989 | CIP <- 1988, NCIB <- 1954, W. Werhoeven <- J. Frateur: strain L 40 |
doi: 10.13145/bacdive2.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Rhodospirillales
- family: Acetobacteraceae
- genus: Acetobacter
- species: Acetobacter aceti
- full scientific name: Acetobacter aceti (Pasteur 1864) Beijerinck 1898 (Approved Lists 1980)
synonyms
- @ref: 20215
- synonym: Mycoderma aceti
@ref: 1402
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Rhizobiales
family: Acetobacteraceae
genus: Acetobacter
species: Acetobacter aceti
full scientific name: Acetobacter aceti (Pasteur 1864) Beijerinck 1898
strain designation: L 40
type strain: yes
Morphology
cell morphology
@ref | gram stain | confidence | cell shape | motility |
---|---|---|---|---|
69480 | negative | 99.998 | ||
115989 | negative | rod-shaped | no |
colony morphology
- @ref: 46757
- incubation period: 1 day
Culture and growth conditions
culture medium
@ref | name | growth | composition | link |
---|---|---|---|---|
41703 | MEDIUM 1 - for Acetobacter, Azotobacter, Gluconobacter, Gluconacetobacter, Mesorhizodium ciceri and Pseudomonas doudoroffii | yes | Distilled water make up to (1000.000 ml);Agar (15.000 g);Yeast extract (5.000 g);Peptone (3.000 g);Mannitol (25.000 g) | |
1402 | YPM MEDIUM (DSMZ Medium 360) | yes | Name: YPM MEDIUM (DSMZ Medium 360) Composition: Mannitol 25.0 g/l Agar 12.0 g/l Yeast extract 5.0 g/l Peptone 3.0 g/l Distilled water | https://mediadive.dsmz.de/medium/360 |
115989 | CIP Medium 1 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=1 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
41703 | positive | growth | 30 | mesophilic |
1402 | positive | growth | 25 | mesophilic |
46757 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
115989 | positive | growth | 22-30 | |
115989 | no | growth | 10 | psychrophilic |
115989 | no | growth | 37 | mesophilic |
115989 | no | growth | 41 | thermophilic |
115989 | no | growth | 45 | thermophilic |
Physiology and metabolism
oxygen tolerance
@ref | oxygen tolerance |
---|---|
46757 | aerobe |
115989 | obligate aerobe |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 98 |
69480 | no | 99.999 |
observation
- @ref: 67770
- observation: quinones: Q-9
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68368 | 17632 | nitrate | - | reduction |
68368 | 28053 | melibiose | - | fermentation |
68368 | 17992 | sucrose | - | fermentation |
68368 | 62345 | L-rhamnose | - | fermentation |
68368 | 30911 | sorbitol | - | fermentation |
68368 | 17268 | myo-inositol | - | fermentation |
68368 | 17634 | D-glucose | - | fermentation |
68368 | 5291 | gelatin | - | hydrolysis |
68368 | 27897 | tryptophan | - | energy source |
68368 | 16199 | urea | - | hydrolysis |
68368 | 16947 | citrate | - | assimilation |
68368 | 18257 | ornithine | - | degradation |
68368 | 25094 | lysine | - | degradation |
68368 | 29016 | arginine | - | hydrolysis |
115989 | 606565 | hippurate | - | hydrolysis |
115989 | 17632 | nitrate | - | reduction |
115989 | 16301 | nitrite | - | reduction |
antibiotic resistance
- @ref: 115989
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68368 | 17997 | dinitrogen | no |
68368 | 16301 | nitrite | no |
68368 | 15688 | acetoin | no |
68368 | 35581 | indole | no |
68368 | 16136 | hydrogen sulfide | no |
115989 | 35581 | indole | no |
metabolite tests
@ref | Chebi-ID | metabolite | voges-proskauer-test | indole test |
---|---|---|---|---|
68368 | 15688 | acetoin | - | |
68368 | 35581 | indole | - |
enzymes
@ref | value | activity | ec |
---|---|---|---|
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 |
68382 | beta-glucosidase | - | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | + | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | - | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | - | 3.1.3.1 |
68368 | gelatinase | - | |
68368 | tryptophan deaminase | - | 4.1.99.1 |
68368 | urease | - | 3.5.1.5 |
68368 | ornithine decarboxylase | - | 4.1.1.17 |
68368 | lysine decarboxylase | - | 4.1.1.18 |
68368 | arginine dihydrolase | - | 3.5.3.6 |
68368 | beta-galactosidase | - | 3.2.1.23 |
115989 | oxidase | - | |
115989 | beta-galactosidase | - | 3.2.1.23 |
115989 | alcohol dehydrogenase | - | 1.1.1.1 |
115989 | gelatinase | - | |
115989 | catalase | + | 1.11.1.6 |
115989 | gamma-glutamyltransferase | - | 2.3.2.2 |
115989 | lysine decarboxylase | - | 4.1.1.18 |
115989 | ornithine decarboxylase | - | 4.1.1.17 |
115989 | urease | + | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
115989 | - | - | + | + | - | + | - | - | + | - | + | + | - | - | - | - | - | - | - | - |
API 20E
@ref | ONPG | ADH Arg | LDC Lys | ODC | CIT | H2S | URE | TDA Trp | IND | VP | GEL | GLU | INO | Sor | RHA | SAC | MEL | NO2 | N2 |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
115989 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
115989 | + | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | + | - | - |
Isolation, sampling and environmental information
isolation
@ref | sample type | sampling date |
---|---|---|
1402 | alcohol turned to vinegar | |
46757 | Beech-wood shavings of vinegar plant | 1922 |
67770 | Alcohol turned to vinegar | |
115989 | Food, Alcohol vinegar |
isolation source categories
Cat1 | Cat2 |
---|---|
#Engineered | #Food production |
#Environmental | #Microbial community |
taxonmaps
- @ref: 69479
- File name: preview.99_2615.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_29;96_152;97_827;98_2025;99_2615&stattab=map
- Last taxonomy: Acetobacter
- 16S sequence: X74066
- Sequence Identity:
- Total samples: 888
- soil counts: 133
- aquatic counts: 132
- animal counts: 499
- plant counts: 124
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
1402 | 1 | Risk group (German classification) |
115989 | 1 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Acetobacter aceti partial 16S-23S ITS, strain CCM 3620 | AJ621845 | 807 | ena | 435 |
20218 | Acetobacter aceti gene for 16S rRNA, partial sequence, strain: JCM 7641 | AB665077 | 1410 | ena | 887700 |
20218 | Acetobacter aceti gene for 16S ribosomal RNA | D30768 | 1410 | ena | 887700 |
20218 | Acetobacter aceti strain LMG 1261 16S ribosomal RNA gene, partial sequence | JF793947 | 1353 | ena | 435 |
20218 | Acetobacter aceti strain LMG 1504 16S ribosomal RNA gene, partial sequence | JF793949 | 1351 | ena | 435 |
20218 | Acetobacter aceti DNA, 16S-23S rRNA ITS region. strain:NBRC 14818 | AB111902 | 900 | ena | 887700 |
20218 | Acetobacter aceti gene for 16S rRNA, partial sequence, strain: NBRC 14818 | AB680674 | 1413 | ena | 887700 |
20218 | Acetobacter aceti 16S rRNA, partial sequence | AB003967 | 155 | ena | 887700 |
20218 | A.aceti gene for 16S rRNA | X74066 | 1480 | ena | 887700 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Acetobacter aceti NBRC 14818 | 887700.7 | wgs | patric | 887700 |
66792 | Acetobacter aceti NBRC 14818 | 887700.6 | wgs | patric | 887700 |
66792 | Acetobacter aceti NBRC 14818 strain DSM 3508 | 887700.10 | wgs | patric | 887700 |
66792 | Acetobacter aceti NBRC 14818 | 2547132264 | draft | img | 887700 |
66792 | Acetobacter aceti DSM 3508 | 2784746776 | draft | img | 887700 |
67770 | Acetobacter aceti NBRC 14818 | GCA_000193495 | complete | ncbi | 887700 |
67770 | Acetobacter aceti NBRC 14818 | GCA_000963905 | contig | ncbi | 887700 |
67770 | Acetobacter aceti NBRC 14818 DSM 3508 | GCA_004341595 | contig | ncbi | 887700 |
GC content
@ref | GC-content | method |
---|---|---|
67770 | 57.4 | thermal denaturation, midpoint method (Tm) |
67770 | 58.6 | thermal denaturation, midpoint method (Tm) |
Genome-based predictions
predictions
- trait: spore-forming
- prediction: no
- confidence: 98
- training_data: no
External links
@ref: 1402
culture collection no.: DSM 3508, ATCC 15973, NCIB 8621, CCUG 18122, LMG 1261-t1, LMG 1261 1, CCTM 3043, NBRC 14818, JCM 7641, BCRC 11688, CCM 3620, CECT 298, CGMCC 1.1809, CIP 103111, ICMP 8807, IFO 14818, LMD 23.1, LMG 1261, LMG 1504, NCCB 23001, NCIMB 8621, VTT E-042567, VTT E-97828
straininfo link
- @ref: 69687
- straininfo: 92754
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Enzymology | 7991672 | IS1032 from Acetobacter xylinum, a new mobile insertion sequence. | Iversen T, Standal R, Pedersen T, Coucheron DH | Plasmid | 10.1006/plas.1994.1043 | 1994 | Amino Acid Sequence, Base Sequence, Cloning, Molecular, *DNA Transposable Elements, DNA, Bacterial/genetics, Gluconacetobacter xylinus/*genetics, Molecular Sequence Data, Sequence Alignment, Sequence Homology | Genetics |
Metabolism | 21081762 | Transcriptome response to different carbon sources in Acetobacter aceti. | Sakurai K, Arai H, Ishii M, Igarashi Y | Microbiology (Reading) | 10.1099/mic.0.045906-0 | 2010 | Acetates/metabolism, Acetobacter/classification/genetics/*growth & development/metabolism, Bacterial Proteins/genetics/*metabolism, Carbon/chemistry/*metabolism, Citric Acid Cycle, Ethanol/metabolism, *Gene Expression Profiling, *Gene Expression Regulation, Bacterial, Glucose/metabolism, Glyoxylates/metabolism, Molecular Sequence Data, Oligonucleotide Array Sequence Analysis, Sequence Analysis, DNA | Transcriptome |
Metabolism | 22153844 | Changes in the gene expression profile of Acetobacter aceti during growth on ethanol. | Sakurai K, Arai H, Ishii M, Igarashi Y | J Biosci Bioeng | 10.1016/j.jbiosc.2011.11.005 | 2011 | Acetobacter/*enzymology/*genetics/metabolism, Alcohol Dehydrogenase/*genetics/metabolism, Ethanol/*metabolism, Gene Expression Profiling, *Gene Expression Regulation, Bacterial, Oligonucleotide Array Sequence Analysis | Enzymology |
Metabolism | 22902276 | Role of the glyoxylate pathway in acetic acid production by Acetobacter aceti. | Sakurai K, Yamazaki S, Ishii M, Igarashi Y, Arai H | J Biosci Bioeng | 10.1016/j.jbiosc.2012.07.017 | 2012 | Acetates/metabolism, Acetic Acid/*metabolism/supply & distribution, Acetobacter/genetics/*metabolism, Biotechnology, Ethanol/metabolism, Glucose/metabolism, Glyoxylates/*metabolism, Isocitrate Lyase/genetics/metabolism, Malate Synthase/genetics/metabolism, Oxidation-Reduction, Transcriptome/genetics | Biotechnology |
Phylogeny | 23194734 | Numerical Analysis of Phenotypic Features and Protein Gel Electrophoregrams of a Wide Variety of Acetobacter strains. Proposal for the Improvement of the Taxonomy of the Genus Acetobacter Beijerinck 1898, 215. | Gossele F, Swings J, Kersters K, Pauwels P, De Ley J | Syst Appl Microbiol | 10.1016/S0723-2020(83)80020-4 | 1983 | ||
Phylogeny | 26637821 | Acetobacter musti sp. nov., isolated from Bobal grape must. | Ferrer S, Manes-Lazaro R, Benavent-Gil Y, Yepez A, Pardo I | Int J Syst Evol Microbiol | 10.1099/ijsem.0.000818 | 2015 | ||
Genetics | 33093051 | Complete Genome Sequence of the Acetic Acid Bacterium Acetobacter aceti NBRC 14818. | Arai H, Kameya M, Ishii M | Microbiol Resour Announc | 10.1128/MRA.01039-20 | 2020 |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
1402 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 3508) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-3508 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
41703 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/14873 | ||||
46757 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 18122) | https://www.ccug.se/strain?id=18122 | |||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg | 10.1093/nar/gkaa1025 | BRENDA, the ELIXIR core data resource in 2021: new developments and updates | Nucleic Acids Res. 49: D498-D508 2020 | 33211880 | |
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68368 | Automatically annotated from API 20E | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
69687 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID92754.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
115989 | Curators of the CIP | Collection of Institut Pasteur (CIP 103111) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20103111 |