Strain identifier
BacDive ID: 1990
Type strain:
Species: Burkholderia lata
Strain Designation: 383, 61
Strain history: CIP <- 2014, CCUG <- 2007, LMG <- 2004, T. Coenye, Gent, Belgium <- 2002, T. Lessie, Massachusetts, USA <- A. Hayward: strain 61
NCBI tax ID(s): 482957 (species)
General
@ref: 16574
BacDive-ID: 1990
DSM-Number: 23089
keywords: genome sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, pigmented
description: Burkholderia lata 383 is an aerobe, mesophilic, Gram-negative bacterium that has a yellow or yellow-purple pigmentation and was isolated from forest soil.
NCBI tax id
- NCBI tax id: 482957
- Matching level: species
strain history
@ref | history |
---|---|
16574 | <- CCUG <- E. Vanlaere, LMG <- T. Coenye, Ghent, Belgium <- T. Lessie, Massachusetts, USA <- A. Hayward |
120566 | CIP <- 2014, CCUG <- 2007, LMG <- 2004, T. Coenye, Gent, Belgium <- 2002, T. Lessie, Massachusetts, USA <- A. Hayward: strain 61 |
doi: 10.13145/bacdive1990.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Burkholderia
- species: Burkholderia lata
- full scientific name: Burkholderia lata Vanlaere et al. 2009
@ref: 16574
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Burkholderia
species: Burkholderia lata
full scientific name: Burkholderia lata Vanlaere et al. 2009
strain designation: 383, 61
type strain: yes
Morphology
cell morphology
@ref | gram stain | cell shape | confidence | motility |
---|---|---|---|---|
23366 | negative | rod-shaped | ||
69480 | negative | 99.996 | ||
120566 | negative | rod-shaped | no |
colony morphology
- @ref: 16574
- type of hemolysis: gamma
pigmentation
- @ref: 23366
- production: yes
- color: yellow or yellow-purple
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
16574 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
120566 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
16574 | positive | growth | 30 | mesophilic |
23366 | positive | growth | 30-37 | mesophilic |
23366 | no | growth | 42 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 23366
- oxygen tolerance: aerobe
spore formation
@ref | spore formation | confidence |
---|---|---|
23366 | no | |
69481 | no | 100 |
69480 | no | 99.99 |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
23366 | 17128 | adipate | + | assimilation |
23366 | 16947 | citrate | + | assimilation |
23366 | 8391 | D-gluconate | + | assimilation |
23366 | 17634 | D-glucose | + | assimilation |
23366 | 16899 | D-mannitol | + | assimilation |
23366 | 16024 | D-mannose | + | assimilation |
23366 | 15589 | L-malate | + | assimilation |
23366 | 506227 | N-acetylglucosamine | + | assimilation |
23366 | 17634 | D-glucose | + | builds acid from |
23366 | 17716 | lactose | + | builds acid from |
23366 | 17306 | maltose | + | builds acid from |
23366 | 18222 | xylose | + | builds acid from |
23366 | 27689 | decanoate | +/- | assimilation |
23366 | 30849 | L-arabinose | +/- | assimilation |
23366 | 17306 | maltose | +/- | assimilation |
23366 | 18401 | phenylacetate | +/- | assimilation |
23366 | 15963 | ribitol | +/- | builds acid from |
23366 | 17992 | sucrose | +/- | builds acid from |
23366 | 4853 | esculin | +/- | hydrolysis |
23366 | 17632 | nitrate | +/- | reduction |
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | + | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 17306 | maltose | - | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 30849 | L-arabinose | + | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 5291 | gelatin | + | hydrolysis |
68369 | 4853 | esculin | + | hydrolysis |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 17634 | D-glucose | - | fermentation |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
metabolite production
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- production: no
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
16574 | catalase | + | 1.11.1.6 |
16574 | cytochrome-c oxidase | + | 1.9.3.1 |
68369 | cytochrome oxidase | + | 1.9.3.1 |
68369 | gelatinase | + | |
68369 | beta-glucosidase | + | 3.2.1.21 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
16574 | - | - | - | - | - | + | + | - | + | + | + | + | + | - | + | + | + | + | + | + | + |
16574 | - | - | - | - | - | + | + | - | + | + | + | + | + | - | + | + | + | + | + | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type | country | origin.country | continent | sampling date | geographic location | isolation date |
---|---|---|---|---|---|---|---|
16574 | forest soil | Trinidad and Tobago | TTO | Middle and South America | |||
23366 | 1958 | ||||||
120566 | Environment, Soil, forest | Trinidad and Tobago | TTO | North America | Trinidad and Tobago | 1958 |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Environmental | #Terrestrial | #Forest |
#Environmental | #Terrestrial | #Soil |
Safety information
risk assessment
@ref | biosafety level | biosafety level comment |
---|---|---|
16574 | 1 | Risk group (German classification) |
120566 | 1 | Risk group (French classification) |
Sequence information
Genome sequences
- @ref: 66792
- description: Burkholderia lata 383
- accession: GCA_000012945
- assembly level: complete
- database: ncbi
- NCBI tax ID: 482957
GC content
@ref | GC-content | method |
---|---|---|
16574 | 67.0 | high performance liquid chromatography (HPLC) |
23366 | 67.0 |
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
motile | yes | 86.367 | no |
flagellated | no | 80.136 | no |
gram-positive | no | 98.45 | yes |
anaerobic | no | 97.915 | yes |
halophile | no | 91.316 | no |
spore-forming | no | 94.049 | yes |
thermophile | no | 99.702 | no |
glucose-util | yes | 92.618 | yes |
aerobic | yes | 88.511 | yes |
glucose-ferment | no | 83.012 | no |
External links
@ref: 16574
culture collection no.: DSM 23089, ATCC 17760, CCUG 55525, LMG 22485, CIP 110773, CCUG 5856, LMG 6991, NCIB 9086
straininfo link
- @ref: 71637
- straininfo: 3972
literature
- topic: Phylogeny
- Pubmed-ID: 19126732
- title: Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov.
- authors: Vanlaere E, Baldwin A, Gevers D, Henry D, De Brandt E, LiPuma JJ, Mahenthiralingam E, Speert DP, Dowson C, Vandamme P
- journal: Int J Syst Evol Microbiol
- DOI: 10.1099/ijs.0.001123-0
- year: 2009
- mesh: Animals, Bacterial Typing Techniques, Base Composition, Burkholderia Infections/microbiology/veterinary, Burkholderia cepacia complex/*classification/genetics/*isolation & purification/physiology, Cystic Fibrosis/*microbiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Female, Genome, Bacterial, Humans, Mastitis/microbiology/*veterinary, Nucleic Acid Hybridization, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Sequence Analysis, DNA, Sheep, Sheep Diseases/*microbiology, Species Specificity
- topic2: Genetics
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
16574 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23089) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23089 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
23366 | Elke Vanlaere, Adam Baldwin, Dirk Gevers, Deborah Henry, Evie De Brandt, John J. LiPuma, Eshwar Mahenthiralingam, David P. Speert, Chris Dowson, Peter Vandamme | 10.1099/ijs.0.001123-0 | Taxon K, a complex within the Burkholderia cepacia complex, comprises at least two novel species, Burkholderia contaminans sp. nov. and Burkholderia lata sp. nov. | IJSEM 59: 102-111 2009 | 19126732 | |
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
68369 | Automatically annotated from API 20NE | |||||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
71637 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3972.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
120566 | Curators of the CIP | Collection of Institut Pasteur (CIP 110773) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110773 |