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Strain identifier

BacDive ID: 1988

Type strain: Yes

Species: Paraburkholderia sabiae

Strain history: <- LMG <- P. Vandamme, University Ghent, Laboratory of Microbiology <- W.-M. Chen, Natl. Kaohsiung Marine Univ. Taiwan <- S. M. de Faria, EMBRAPA-Agrobiologia Brazil; Br3407

NCBI tax ID(s): 273251 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 17184

BacDive-ID: 1988

DSM-Number: 23623

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Paraburkholderia sabiae DSM 23623 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from root nodule of Mimosa caesalpiniifolia.

NCBI tax id

  • NCBI tax id: 273251
  • Matching level: species

strain history: <- LMG <- P. Vandamme, University Ghent, Laboratory of Microbiology <- W.-M. Chen, Natl. Kaohsiung Marine Univ. Taiwan <- S. M. de Faria, EMBRAPA-Agrobiologia Brazil; Br3407

doi: 10.13145/bacdive1988.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Paraburkholderia
  • species: Paraburkholderia sabiae
  • full scientific name: Paraburkholderia sabiae (Chen et al. 2008) Sawana et al. 2015
  • synonyms

    • @ref: 20215
    • synonym: Burkholderia sabiae

@ref: 17184

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Paraburkholderia

species: Paraburkholderia sabiae

full scientific name: Paraburkholderia sabiae (Chen et al. 2008) Sawana et al. 2015

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapeconfidence
32630negative0.6-1.5 µm0.4-0.6 µmrod-shaped
69480negative98.664

colony morphology

  • @ref: 17184
  • type of hemolysis: gamma

pigmentation

  • @ref: 32630
  • production: yes

Culture and growth conditions

culture medium

  • @ref: 17184
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17184positivegrowth30mesophilic
32630positivegrowth28-37mesophilic
32630positiveoptimum28mesophilic
61593positivegrowth28mesophilic

culture pH

@refabilitytypepH
32630positivegrowth7
32630positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32630aerobe
61593aerobe

spore formation

@refspore formationconfidence
32630no
69480no96.762

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 98.307

observation

  • @ref: 32630
  • observation: aggregates in chains

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3263022599arabinose+carbon source
3263027689decanoate+carbon source
3263016947citrate+carbon source
3263024265gluconate+carbon source
3263017234glucose+carbon source
3263025115malate+carbon source
3263029864mannitol+carbon source
3263037684mannose+carbon source
3263018401phenylacetate+carbon source
6836925115malate+assimilation
6836917128adipate-assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
17184catalase+1.11.1.6
17184cytochrome-c oxidase+1.9.3.1
32630catalase+1.11.1.6
32630cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
17184+------++++++-++-+++

Isolation, sampling and environmental information

isolation

@refsample typehost speciescountryorigin.countrycontinentsampling date
17184root nodule of Mimosa caesalpiniifoliaMimosa caesalpiniifoliaBrazilBRAMiddle and South America
61593Root nodules of Mimosa caesalpiniifoliaBrazilBRAMiddle and South America2000

isolation source categories

Cat1Cat2Cat3
#Host#Plants#Herbaceous plants (Grass,Crops)
#Host Body-Site#Plant#Root nodule

Safety information

risk assessment

  • @ref: 17184
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17184
  • description: Burkholderia sabiae strain Br3407 16S ribosomal RNA gene, partial sequence
  • accession: AY773186
  • length: 1483
  • database: ena
  • NCBI tax ID: 273251

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paraburkholderia sabiae LMG 24235GCA_904848645contigncbi273251
66792Paraburkholderia sabiae strain LMG 24235273251.3wgspatric273251
66792Acinetobacter baumannii AB-HZ-B16GCA_006366925contigpatric470

GC content

  • @ref: 32630
  • GC-content: 64.5

External links

@ref: 17184

culture collection no.: DSM 23623, BCRC 17587, LMG 24235, CCUG 58093, BR Br3407, BR 3407

straininfo link

@refpassport
20218http://www.straininfo.net/strains/709703
20218http://www.straininfo.net/strains/833576

literature

  • topic: Phylogeny
  • Pubmed-ID: 18768625
  • title: Burkholderia sabiae sp. nov., isolated from root nodules of Mimosa caesalpiniifolia.
  • authors: Chen WM, de Faria SM, Chou JH, James EK, Elliott GN, Sprent JI, Bontemps C, Young JP, Vandamme P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65816-0
  • year: 2008
  • mesh: Bacterial Proteins/analysis, Bacterial Typing Techniques, Brazil, Burkholderia/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, DNA Fingerprinting, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Electrophoresis, Gel, Pulsed-Field, Fatty Acids/analysis, Genes, rRNA, Mimosa/*microbiology, Molecular Sequence Data, Nitrogen Fixation, Nucleic Acid Hybridization, Phylogeny, Plant Roots/microbiology, Proteome/analysis, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid
  • topic2: Enzymology

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
17184Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23623)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23623
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2884110.1099/ijs.0.65816-018768625
32630Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2877604128841
61593Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 58093)https://www.ccug.se/strain?id=58093
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)