Strain identifier

BacDive ID: 1985

Type strain: Yes

Species: Burkholderia latens

Strain history: <- CCUG <- E. Vanlaere, LMG <- S. Campana; FIRENZE 3

NCBI tax ID(s): 488446 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
Archive
version 8.1 (current version):
version 8:
version 7.1:
version 7:
version 6:
version 5:
version 4.1:
version 4:
version 3:
version 2.1:
version 2:
version 1:
version 8.1 (current version)

General

@ref: 17208

BacDive-ID: 1985

DSM-Number: 23436

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Burkholderia latens DSM 23436 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sputum, patient with Cystic Fibrosis.

NCBI tax id

  • NCBI tax id: 488446
  • Matching level: species

strain history

  • @ref: 17208
  • history: <- CCUG <- E. Vanlaere, LMG <- S. Campana; FIRENZE 3

doi: 10.13145/bacdive1985.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Burkholderia
  • species: Burkholderia latens
  • full scientific name: Burkholderia latens Vanlaere et al. 2008

@ref: 17208

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Burkholderia

species: Burkholderia latens

full scientific name: Burkholderia latens Vanlaere et al. 2008

type strain: yes

Morphology

cell morphology

  • @ref: 23365
  • gram stain: negative
  • cell shape: rod-shaped

colony morphology

  • @ref: 17208
  • type of hemolysis: gamma

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
17208R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
17208TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
17208positivegrowth30mesophilic
23365positivegrowth30-42
60229positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
23365aerobe
60229aerobe

spore formation

  • @ref: 23365
  • spore formation: no

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2336517306maltose-assimilation
233654853esculin-hydrolysis
2336517632nitrate-reduction
2336517128adipate+assimilation
2336527689decanoate+assimilation
2336516947citrate+assimilation
233658391D-gluconate+assimilation
2336516899D-mannitol+assimilation
2336516024D-mannose+assimilation
2336517234glucose+assimilation
2336530849L-arabinose+assimilation
2336515589L-malate+assimilation
23365506227N-acetylglucosamine+assimilation
2336518401phenylacetate+assimilation
2336515963ribitol+builds acid from
2336517234glucose+builds acid from
2336517716lactose+builds acid from
2336517306maltose+builds acid from
2336517992sucrose+builds acid from
2336518222xylose+builds acid from
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin+hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose+fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
17208catalase+1.11.1.6
17208cytochrome-c oxidase+1.9.3.1
23365arginine dihydrolase-3.5.3.6
23365beta-galactosidase+3.2.1.23
23365cytochrome oxidase+1.9.3.1
23365gelatinase+
23365lysine decarboxylase+4.1.1.18
23365ornithine decarboxylase-4.1.1.17
23365tryptophanase-4.1.99.1
23365urease-3.5.1.5
68369gelatinase+
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPAC
17208--+---+++++++-++++++

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling date
17208sputum, patient with Cystic FibrosisItalyITAEurope
233652000
60229Human sputum,cystic fibrosisItalyITAEurope1998-09-01

isolation source categories

Cat1Cat2Cat3
#Infection#Disease#Cystic fibrosis
#Infection#Patient
#Host Body Product#Fluids#Sputum

Safety information

risk assessment

  • @ref: 17208
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 17208
  • description: Burkholderia latens partial 16S rRNA gene, type strain R-5630T
  • accession: AM747628
  • length: 1502
  • database: ena
  • NCBI tax ID: 488446

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Burkholderia latens LMG 24064GCA_902499045contigncbi488446
66792Burkholderia latens CCUG 54555GCA_008802135contigncbi488446
66792Burkholderia latens strain CCUG 54555488446.8wgspatric488446
66792Burkholderia latens strain LMG 24064488446.10wgspatric488446

GC content

  • @ref: 23365
  • GC-content: 67.0

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
gram-positiveno98.39yes
anaerobicno98.855yes
halophileno95.539no
spore-formingno93.386yes
glucose-utilyes90.944yes
aerobicyes91.049yes
thermophileno99.287yes
motileyes88.774no
flagellatedno81.667no
glucose-fermentno88.892no

External links

@ref: 17208

culture collection no.: DSM 23436, CCUG 54555, LMG 24064, FIRENZE 3

straininfo link

  • @ref: 71632
  • straininfo: 19767

literature

  • topic: Phylogeny
  • Pubmed-ID: 18599699
  • title: Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complex.
  • authors: Vanlaere E, Lipuma JJ, Baldwin A, Henry D, De Brandt E, Mahenthiralingam E, Speert D, Dowson C, Vandamme P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.65634-0
  • year: 2008
  • mesh: Base Sequence, Burkholderia/chemistry/*classification/genetics, Burkholderia cepacia complex/*classification, Genes, Bacterial/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Polymorphism, Restriction Fragment Length, RNA, Ribosomal, 16S/genetics, Rec A Recombinases/genetics, Species Specificity
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
17208Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23436)https://www.dsmz.de/collection/catalogue/details/culture/DSM-23436
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
23365Elke Vanlaere, John J. LiPuma, Adam Baldwin, Deborah Henry, Evie De Brandt, Eshwar Mahenthiralingam, David Speert, Chris Dowson, Peter Vandamme10.1099/ijs.0.65634-0Burkholderia latens sp. nov., Burkholderia diffusa sp. nov., Burkholderia arboris sp. nov., Burkholderia seminalis sp. nov. and Burkholderia metallica sp. nov., novel species within the Burkholderia cepacia complexIJSEM 58: 1580-1590 200818599699
60229Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 54555)https://www.ccug.se/strain?id=54555
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
71632Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID19767.1StrainInfo: A central database for resolving microbial strain identifiers