Strain identifier

BacDive ID: 1969

Type strain: Yes

Species: Paraburkholderia ferrariae

Strain Designation: FeGl01, FeGI01

Strain history: CIP <- 2006, CECT <- E. Velazquez: strain FeGI01

NCBI tax ID(s): 386056 (species)

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General

@ref: 7459

BacDive-ID: 1969

DSM-Number: 18251

keywords: 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped

description: Paraburkholderia ferrariae FeGl01 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from material from iron mine.

NCBI tax id

  • NCBI tax id: 386056
  • Matching level: species

strain history

@refhistory
7459<- E. Velázquez; FeG101 <- C. García-Balboa
119331CIP <- 2006, CECT <- E. Velazquez: strain FeGI01

doi: 10.13145/bacdive1969.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Paraburkholderia
  • species: Paraburkholderia ferrariae
  • full scientific name: Paraburkholderia ferrariae (Valverde et al. 2006) Sawana et al. 2015

  • synonyms

    • @ref: 20215
    • synonym: Burkholderia ferrariae

@ref: 7459

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Paraburkholderia

species: Paraburkholderia ferrariae

full scientific name: Paraburkholderia ferrariae (Valverde et al. 2006) Sawana et al. 2015

strain designation: FeGl01, FeGI01

type strain: yes

Morphology

cell morphology

  • @ref: 119331
  • gram stain: negative
  • cell shape: rod-shaped
  • motility: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7459R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
41974MEDIUM 328- for nutrient agaryesDistilled water make up to (1000.000 ml);Agar (15.000 g);Peptone (5.000g);Beef extract (3.000 g)
119331CIP Medium 328yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=328

culture temp

@refgrowthtypetemperaturerange
7459positivegrowth28mesophilic
41974positivegrowth30mesophilic
60127positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
60127aerobe
119331obligate aerobe

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836917128adipate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction
11933117632nitrate+reduction
11933116301nitrite-reduction

metabolite production

@refChebi-IDmetaboliteproduction
6836935581indoleno
11933135581indoleno

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68369cytochrome oxidase-1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6
119331oxidase-
119331catalase+1.11.1.6
119331urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
60127-+++-+----++--------
119331-++--+----++--------

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
7459+------+/-++++++/-++++++-
60127+-------+++++-++++++-

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentgeographic location
7459material from iron mineBrazilBRAMiddle and South America
60127High-phosphorous iron oreBrazilBRAMiddle and South AmericaMinas Gerais State,Jangada mine
119331Iron oreBrazilBRAMiddle and South America

isolation source categories

  • Cat1: #Engineered
  • Cat2: #Other
  • Cat3: #Mine

taxonmaps

  • @ref: 69479
  • File name: preview.99_6368.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_624;97_1919;98_4706;99_6368&stattab=map
  • Last taxonomy: Paraburkholderia
  • 16S sequence: AB537487
  • Sequence Identity:
  • Total samples: 1026
  • soil counts: 201
  • aquatic counts: 59
  • animal counts: 722
  • plant counts: 44

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
74591Risk group (German classification)
1193311Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Burkholderia ferrariae strain LMG 23612 16S ribosomal RNA gene, partial sequenceHQ8490801124ena386056
20218Burkholderia ferrariae gene for 16S ribosomal RNA, partial sequence, strain: NBRC 106233AB5374871456ena386056
7459Burkholderia ferrariae strain FeGl01 16S ribosomal RNA gene, partial sequenceDQ5145371523ena386056

External links

@ref: 7459

culture collection no.: CCUG 54295, DSM 18251, CECT 7171, LMG 23612, CIP 109391

straininfo link

  • @ref: 71614
  • straininfo: 291553

literature

  • topic: Phylogeny
  • Pubmed-ID: 17012573
  • title: Burkholderia ferrariae sp. nov., isolated from an iron ore in Brazil.
  • authors: Valverde A, Delvasto P, Peix A, Velazquez E, Santa-Regina I, Ballester A, Rodriguez-Barrueco C, Garcia-Balboa C, Igual JM
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.64498-0
  • year: 2006
  • mesh: Bacterial Typing Techniques, Brazil, Burkholderia/chemistry/*classification/genetics/*isolation & purification, DNA, Bacterial/analysis, DNA, Ribosomal, Fatty Acids/analysis, Genes, rRNA, *Iron, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/analysis/genetics, Sequence Analysis, DNA
  • topic2: Genetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7459Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 18251)https://www.dsmz.de/collection/catalogue/details/culture/DSM-18251
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41974Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7128
60127Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 54295)https://www.ccug.se/strain?id=54295
68369Automatically annotated from API 20NE
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
71614Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID291553.1StrainInfo: A central database for resolving microbial strain identifiers
119331Curators of the CIPCollection of Institut Pasteur (CIP 109391)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109391