Strain identifier

BacDive ID: 195

Type strain: Yes

Species: Schaalia naturae

Strain Designation: BL-79

Strain history: <- NRRL; NRRL-B-24670

NCBI tax ID(s): 635203 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 18274

BacDive-ID: 195

DSM-Number: 26713

keywords: 16S sequence, Bacteria, anaerobe, mesophilic

description: Schaalia naturae BL-79 is an anaerobe, mesophilic bacterium that was isolated from chlorinated solvent contaminated groundwater.

NCBI tax id

  • NCBI tax id: 635203
  • Matching level: species

strain history

  • @ref: 18274
  • history: <- NRRL; NRRL-B-24670

doi: 10.13145/bacdive195.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Actinomycetales
  • family: Actinomycetaceae
  • genus: Schaalia
  • species: Schaalia naturae
  • full scientific name: Schaalia naturae (Rao et al. 2012) Nouioui et al. 2018
  • synonyms

    • @ref: 20215
    • synonym: Actinomyces naturae

@ref: 18274

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Actinomycetaceae

genus: Schaalia

species: Schaalia naturae

full scientific name: Schaalia naturae (Rao et al. 2012) Nouioui et al. 2018

strain designation: BL-79

type strain: yes

Culture and growth conditions

culture medium

  • @ref: 18274
  • name: PYG MEDIUM (MODIFIED) (DSMZ Medium 104)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/104
  • composition: Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water

culture temp

@refgrowthtypetemperaturerange
18274positivegrowth37mesophilic
61062positivegrowth37mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
18274anaerobe
61062anaerobe
61062microaerophile

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6838016199urea-hydrolysis
6838029016arginine-hydrolysis
6838016024D-mannose+fermentation
6838016634raffinose-fermentation
6838029985L-glutamate-degradation
6838017632nitrate-reduction
6838027897tryptophan-energy source

metabolite production

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68380
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68380glutamyl-glutamate arylamidase-
68380glycin arylamidase-
68380alanine arylamidase-3.4.11.2
68380tyrosine arylamidase+
68380pyrrolidonyl arylamidase-3.4.19.3
68380leucine arylamidase+3.4.11.1
68380phenylalanine arylamidase+
68380leucyl glycin arylamidase-3.4.11.1
68380proline-arylamidase+3.4.11.5
68380L-arginine arylamidase+
68380alkaline phosphatase-3.1.3.1
68380tryptophan deaminase-4.1.99.1
68380alpha-fucosidase-3.2.1.51
68380glutamate decarboxylase-4.1.1.15
68380N-acetyl-beta-glucosaminidase-3.2.1.52
68380beta-glucuronidase-3.2.1.31
68380beta-Galactosidase 6-phosphate-
68380beta-galactosidase+3.2.1.23
68380alpha-galactosidase+3.2.1.22
68380arginine dihydrolase-3.5.3.6
68380urease-3.5.1.5

API rID32A

@refUREADH Argalpha GALbeta GALbeta GPalpha GLUbeta GLUalpha ARAbeta GURbeta NAGMNERAFGDCalpha FUCNITINDPALArgAProALGAPheALeuAPyrATyrAAlaAGlyAHisAGGASerA
18274--++-+/-+/-+/---+------++-++-+--+/--+/-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinentsampling date
18274chlorinated solvent contaminated groundwaterBaton Rouge, LA; PetroProcessors of Louisiana, IncUSAUSANorth America
61062GroundwaterLouisiana,Baton RougeUSAUSANorth America2005

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Aquatic#Groundwater

taxonmaps

  • @ref: 69479
  • File name: preview.99_21676.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_224;96_10970;97_13290;98_16356;99_21676&stattab=map
  • Last taxonomy: Schaalia naturae subclade
  • 16S sequence: FJ234421
  • Sequence Identity:
  • Total samples: 948
  • soil counts: 84
  • aquatic counts: 122
  • animal counts: 718
  • plant counts: 24

Safety information

risk assessment

  • @ref: 18274
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 18274
  • description: Actinomyces naturae 16S ribosomal RNA gene, partial sequence
  • accession: FJ234421
  • length: 1463
  • database: ena
  • NCBI tax ID: 635203

GC content

  • @ref: 18274
  • GC-content: 69.8

External links

@ref: 18274

culture collection no.: DSM 26713, CCUG 56698, NRRL B-24670

straininfo link

  • @ref: 69878
  • straininfo: 406130

literature

  • topic: Phylogeny
  • Pubmed-ID: 21965039
  • title: Actinomyces naturae sp. nov., the first Actinomyces sp. isolated from a non-human or animal source.
  • authors: Rao JU, Rash BA, Nobre MF, da Costa MS, Rainey FA, Moe WM
  • journal: Antonie Van Leeuwenhoek
  • DOI: 10.1007/s10482-011-9644-4
  • year: 2011
  • mesh: Actinomyces/*classification/genetics/*isolation & purification/physiology, Amino Acids/analysis, Bacterial Typing Techniques, Base Composition, Carbohydrate Metabolism, Carbohydrates/analysis, Cell Wall/chemistry, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Fermentation, Flagella/physiology, Groundwater/*microbiology, Hydrogen-Ion Concentration, Molecular Sequence Data, Peptidoglycan/chemistry, Phospholipids/analysis, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Soil Pollutants/analysis/metabolism, Temperature
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitle
18274Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 26713)https://www.dsmz.de/collection/catalogue/details/culture/DSM-26713
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
61062Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 56698)https://www.ccug.se/strain?id=56698
68380Automatically annotated from API rID32A
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69878Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID406130.1StrainInfo: A central database for resolving microbial strain identifiers