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Strain identifier

BacDive ID: 1940

Type strain: Yes

Species: Paraburkholderia caribensis

Strain Designation: MWAP64

Strain history: <- LMG <- W. Achouak; MWAP64

NCBI tax ID(s): 75105 (species)

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General

@ref: 4976

BacDive-ID: 1940

DSM-Number: 13236

keywords: genome sequence, 16S sequence, Bacteria, mesophilic

description: Paraburkholderia caribensis MWAP64 is a mesophilic bacterium that was isolated from soil, vertisol.

NCBI tax id

  • NCBI tax id: 75105
  • Matching level: species

strain history: <- LMG <- W. Achouak; MWAP64

doi: 10.13145/bacdive1940.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Paraburkholderia
  • species: Paraburkholderia caribensis
  • full scientific name: Paraburkholderia caribensis (Achouak et al. 1999) Sawana et al. 2015

  • synonyms

    • @ref: 20215
    • synonym: Burkholderia caribensis

@ref: 4976

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Paraburkholderia

species: Paraburkholderia caribensis

full scientific name: Paraburkholderia caribensis (Achouak et al. 1999) Sawana et al. 2015

strain designation: MWAP64

type strain: yes

Morphology

cell morphology

  • @ref: 69480
  • gram stain: negative
  • confidence: 98.619

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4976R2A MEDIUM (DSMZ Medium 830)yeshttps://mediadive.dsmz.de/medium/830Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
41958MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
4976positivegrowth28mesophilic
41958positivegrowth30mesophilic

Physiology and metabolism

spore formation

  • @ref: 69480
  • spore formation: no
  • confidence: 97.691

halophily

  • @ref: 69480
  • halophily level: non-halophilic
  • confidence: 97.67

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
4976soil, vertisolFrench West IndiesMartiniqueFRAMiddle and South America
55581VertisolMartiniqueFRAMiddle and South America

isolation source categories

  • Cat1: #Environmental
  • Cat2: #Terrestrial
  • Cat3: #Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_3026.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_173;97_511;98_587;99_3026&stattab=map
  • Last taxonomy: Paraburkholderia caribensis
  • 16S sequence: HQ849077
  • Sequence Identity:
  • Total samples: 6895
  • soil counts: 4848
  • aquatic counts: 414
  • animal counts: 645
  • plant counts: 988

Safety information

risk assessment

  • @ref: 4976
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Burkholderia caribensis strain LMG 18531 16S ribosomal RNA gene, partial sequenceHQ8490771124ena75105
4976Burkholderia caribiensis 16S rRNA gene, strain MWAP64Y170091432ena75105

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Paraburkholderia caribensis DSM 13236GCA_002902945completencbi75105
66792Paraburkholderia caribensis MWAP64GCA_001449005completencbi75105
66792Paraburkholderia caribensis LMG 18531GCA_902833515scaffoldncbi75105
66792Paraburkholderia caribensis strain DSM 1323675105.13completepatric75105
66792Paraburkholderia caribensis strain LMG 1853175105.16wgspatric75105
66792Paraburkholderia caribensis LMG 185312643221416completeimg75105
66792Paraburkholderia caribensis DSM 132362811995132completeimg75105
66792Listeria monocytogenes 2013L-5444GCA_013626005contigpatric1639
66792Acinetobacter baumannii C16GCA_026194565contigpatric470

External links

@ref: 4976

culture collection no.: DSM 13236, CCUG 42847, CIP 106784, LMG 18531

straininfo link

@refpassport
20218http://www.straininfo.net/strains/149466
20218http://www.straininfo.net/strains/47663
20218http://www.straininfo.net/strains/149465
20218http://www.straininfo.net/strains/47662

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny10319504Burkholderia caribensis sp. nov., an exopolysaccharide-producing bacterium isolated from vertisol microaggregates in Martinique.Achouak W, Christen R, Barakat M, Martel MH, Heulin TInt J Syst Bacteriol10.1099/00207713-49-2-7871999Burkholderia/*classification/isolation & purification/*physiology, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Genes, rRNA, Martinique, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, Polymerase Chain Reaction/methods, Polysaccharides, Bacterial/*biosynthesis, RNA, Ribosomal, 16S/genetics, Restriction Mapping, Sequence Analysis, DNA, *Soil MicrobiologyGenetics
Phylogeny16449457Burkholderia terrae sp. nov., isolated from a forest soil.Yang HC, Im WT, Kim KK, An DS, Lee STInt J Syst Evol Microbiol10.1099/ijs.0.63968-02006Bacterial Typing Techniques, Burkholderia/chemistry/*classification/genetics/isolation & purification, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Genes, rRNA, Genotype, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, *Soil Microbiology, Trees/*microbiologyGenetics
Metabolism23568428Enhanced degradation of haloacid by heterologous expression in related Burkholderia species.Su X, Deng L, Kong KF, Tsang JSBiotechnol Bioeng10.1002/bit.249172013Acetates/metabolism, Bacterial Proteins/genetics/*metabolism, Biodegradation, Environmental, *Burkholderia/enzymology/genetics/metabolism, Hydrolases/genetics/*metabolism, Metabolic Engineering/*methods, RNA, Messenger/analysis/genetics/metabolism, Substrate SpecificityEnzymology
Genetics26823586Complete Genome Sequence of the Exopolysaccharide-Producing Burkholderia caribensis Type Strain MWAP64.Pan Y, Kong KF, Tsang JSGenome Announc10.1128/genomeA.01636-152016
Phylogeny29185955Paraburkholderia azotifigens sp. nov., a nitrogen-fixing bacterium isolated from paddy soil.Choi GM, Im WTInt J Syst Evol Microbiol10.1099/ijsem.0.0025052017Bacterial Typing Techniques, Base Composition, Burkholderiaceae/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Nitrogen Fixation, Nucleic Acid Hybridization, Oryza, Phospholipids/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, *Soil Microbiology, Ubiquinone/chemistryTranscriptome
Phylogeny32068849Delineation of a Subgroup of the Genus Paraburkholderia, Including P. terrae DSM 17804T, P. hospita DSM 17164T, and Four Soil-Isolated Fungiphiles, Reveals Remarkable Genomic and Ecological Features-Proposal for the Definition of a P. hospita Species Cluster.Pratama AA, Jimenez DJ, Chen Q, Bunk B, Sproer C, Overmann J, van Elsas JDGenome Biol Evol10.1093/gbe/evaa0312020Burkholderiaceae/*genetics/growth & development/metabolism, Ecology, Fungi/*genetics/growth & development/metabolism, *Genome, Bacterial, *Genome, Fungal, Genomics/*methods, Phylogeny, Soil Microbiology, Species SpecificityGenetics

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4976Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 13236)https://www.dsmz.de/collection/catalogue/details/culture/DSM-13236
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
41958Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/18952
55581Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 42847)https://www.ccug.se/strain?id=42847
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)