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Strain identifier

BacDive ID: 1929

Type strain: No

Species: Burkholderia vietnamiensis

Strain Designation: G4, R1808

Strain history: <- M.S. Shields; (Burkholderia cepacia) <- M. J. K. Nelson; G4

NCBI tax ID(s): 60552 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 4467

BacDive-ID: 1929

DSM-Number: 11737

keywords: genome sequence, Bacteria, mesophilic

description: Burkholderia vietnamiensis G4 is a mesophilic bacterium that was isolated from soil formerly contaminated.

NCBI tax id

  • NCBI tax id: 60552
  • Matching level: species

strain history: <- M.S. Shields; (Burkholderia cepacia) <- M. J. K. Nelson; G4

doi: 10.13145/bacdive1929.20221219.7.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Burkholderia
  • species: Burkholderia vietnamiensis
  • full scientific name: Burkholderia vietnamiensis Gillis et al. 1995

@ref: 4467

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Burkholderia

species: Burkholderia vietnamiensis

full scientific name: Burkholderia vietnamiensis Gillis et al. 1995

strain designation: G4, R1808

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4467TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
4467COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 4467
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
4467+------++++++-+++/-++++

Isolation, sampling and environmental information

isolation

  • @ref: 4467
  • sample type: soil formerly contaminated
  • geographic location: Florida, Pensacola
  • country: USA
  • origin.country: USA
  • continent: North America
  • latitude: 30.4333
  • longitude: -87.2404

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 4467
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Burkholderia vietnamiensis G4 G4GCA_000016205completencbi269482
66792Burkholderia vietnamiensis G4269482.44plasmidpatric269482
66792Burkholderia vietnamiensis G4269482.45plasmidpatric269482
66792Burkholderia vietnamiensis G4269482.11completepatric269482
66792Burkholderia vietnamiensis G4269482.46plasmidpatric269482
66792Burkholderia vietnamiensis G4269482.47plasmidpatric269482
66792Burkholderia vietnamiensis G4269482.48plasmidpatric269482
66792Burkholderia vietnamiensis G4640069307completeimg269482
66792Leptolinea sp. UBA1387 UBA1387GCA_002305345scaffoldpatric1946749
66792Nitrosopumilales archaeon NORP164GCA_002317805contigpatric2026768
66792Euryarchaeota archaeon MED807GCA_002705345contigpatric2026739
66792Phyllobacteriaceae bacterium AS3CglBPFA_9GCA_012797525contigpatric1871068
66792Sphingobacteriaceae bacterium EsbE_18-Q3-R3-47_MAXAC.117_subGCA_016705695contigpatric2021370
66792Cytophagaceae bacterium Ribe_18-Q3-R11-54_MAXAC.058GCA_016722195contigpatric2026729
66792Thaumarchaeota archaeon FK_Sedi_B_Bin.62GCA_023481325scaffoldpatric2026795
66792Cellvibrionaceae bacterium R2S4C3D_S43.016GCA_025800265contigpatric2026723
66792uncultured Chthonomonas sp. Loc080925-8m_bin-678GCA_903941125contigpatric1642931
66792uncultured Buttiauxella sp. SRR12181029_bin.1_metawrap_v1.3.0_MAGGCA_946480445contigpatric389339

External links

@ref: 4467

culture collection no.: DSM 11737, ATCC 53617

straininfo link

@refpassport
20218http://www.straininfo.net/strains/162830
20218http://www.straininfo.net/strains/116659

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
4467Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11737)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11737
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE