Strain identifier

BacDive ID: 1929

Type strain: No

Species: Burkholderia vietnamiensis

Strain Designation: G4, R1808

Strain history: <- M.S. Shields; (Burkholderia cepacia) <- M. J. K. Nelson; G4

NCBI tax ID(s): 60552 (species)

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General

@ref: 4467

BacDive-ID: 1929

DSM-Number: 11737

keywords: genome sequence, Bacteria, mesophilic

description: Burkholderia vietnamiensis G4 is a mesophilic bacterium that was isolated from soil formerly contaminated.

NCBI tax id

  • NCBI tax id: 60552
  • Matching level: species

strain history

  • @ref: 4467
  • history: <- M.S. Shields; (Burkholderia cepacia) <- M. J. K. Nelson; G4

doi: 10.13145/bacdive1929.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Betaproteobacteria
  • order: Burkholderiales
  • family: Burkholderiaceae
  • genus: Burkholderia
  • species: Burkholderia vietnamiensis
  • full scientific name: Burkholderia vietnamiensis Gillis et al. 1995

@ref: 4467

domain: Bacteria

phylum: Proteobacteria

class: Betaproteobacteria

order: Burkholderiales

family: Burkholderiaceae

genus: Burkholderia

species: Burkholderia vietnamiensis

full scientific name: Burkholderia vietnamiensis Gillis et al. 1995

strain designation: G4, R1808

type strain: no

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
4467TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://mediadive.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
4467COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://mediadive.dsmz.de/medium/693Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

culture temp

  • @ref: 4467
  • growth: positive
  • type: growth
  • temperature: 30
  • range: mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate+assimilation
6836927689decanoate+assimilation
6836924265gluconate+assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine+assimilation
6836916899D-mannitol+assimilation
6836916024D-mannose+assimilation
6836930849L-arabinose+assimilation
6836917634D-glucose+assimilation
683695291gelatin-hydrolysis
683694853esculin-hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate+reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase-
68369beta-glucosidase-3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
4467+------++++++-+++/-++++

Isolation, sampling and environmental information

isolation

  • @ref: 4467
  • sample type: soil formerly contaminated
  • geographic location: Florida, Pensacola
  • country: USA
  • origin.country: USA
  • continent: North America
  • latitude: 30.4333
  • longitude: -87.2404

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Terrestrial#Soil

Safety information

risk assessment

  • @ref: 4467
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Burkholderia vietnamiensis G4GCA_000016205completencbi269482
66792Burkholderia vietnamiensis G4269482.44plasmidpatric269482
66792Burkholderia vietnamiensis G4269482.45plasmidpatric269482
66792Burkholderia vietnamiensis G4269482.11completepatric269482
66792Burkholderia vietnamiensis G4269482.46plasmidpatric269482
66792Burkholderia vietnamiensis G4269482.47plasmidpatric269482
66792Burkholderia vietnamiensis G4269482.48plasmidpatric269482
66792Burkholderia vietnamiensis G4640069307completeimg269482

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileyes86.802no
flagellatedno84.366no
gram-positiveno98.154no
anaerobicno98.279no
halophileno96.304no
spore-formingno93.942no
thermophileno99.494no
glucose-utilyes89.228yes
aerobicyes88.332no
glucose-fermentno89.328yes

External links

@ref: 4467

culture collection no.: DSM 11737, ATCC 53617

straininfo link

@refstraininfo
7157316530
7157449163

Reference

@idauthorscataloguedoi/urltitle
4467Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 11737)https://www.dsmz.de/collection/catalogue/details/culture/DSM-11737
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE
71573Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID16530.1StrainInfo: A central database for resolving microbial strain identifiers
71574Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID49163.1StrainInfo: A central database for resolving microbial strain identifiers