Strain identifier
BacDive ID: 1906
Type strain:
Species: Burkholderia cepacia
Strain Designation: 717
Strain history: CIP <- 1980, C. Richard, Inst. Pasteur, Paris, France <- ATCC <- R.W. Ballard: strain 717 <- M.P. Starr <- W.H. Burkholder, Pseudomonas cepacia
NCBI tax ID(s): 983594 (strain), 292 (species)
General
@ref: 3094
BacDive-ID: 1906
DSM-Number: 7288
keywords: genome sequence, 16S sequence, Bacteria, obligate aerobe, mesophilic, motile, antibiotic resistance, human pathogen
description: Burkholderia cepacia 717 is an obligate aerobe, mesophilic, motile human pathogen that has multiple antibiotic resistances and was isolated from Onion.
NCBI tax id
NCBI tax id | Matching level |
---|---|
292 | species |
983594 | strain |
strain history
@ref | history |
---|---|
3094 | <- ATCC <- R.W. Ballard; 717 <- M. Starr, ICPB; PC25 <- W. Burkholder |
67770 | Y. Kosako 85005 <-- Nissui Pharm. Co., Ltd. <-- ATCC 25416 <-- R. W. Ballard 717 <-- M. Starr ICPB PC 25 <-- W. Burkholder. |
117247 | CIP <- 1980, C. Richard, Inst. Pasteur, Paris, France <- ATCC <- R.W. Ballard: strain 717 <- M.P. Starr <- W.H. Burkholder, Pseudomonas cepacia |
doi: 10.13145/bacdive1906.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Betaproteobacteria
- order: Burkholderiales
- family: Burkholderiaceae
- genus: Burkholderia
- species: Burkholderia cepacia
- full scientific name: Burkholderia cepacia (Palleroni and Holmes 1981 ex Burkholder 1950) Yabuuchi et al. 1993
synonyms
- @ref: 20215
- synonym: Pseudomonas cepacia
@ref: 3094
domain: Bacteria
phylum: Proteobacteria
class: Betaproteobacteria
order: Burkholderiales
family: Burkholderiaceae
genus: Burkholderia
species: Burkholderia cepacia
full scientific name: Burkholderia cepacia (Palleroni and Holmes 1981) Yabuuchi et al. 1993
strain designation: 717
type strain: yes
Morphology
cell morphology
@ref | motility | confidence | gram stain | cell shape |
---|---|---|---|---|
69480 | yes | 91.674 | ||
69480 | 99.989 | negative | ||
117247 | yes | negative | rod-shaped |
colony morphology
- @ref: 3094
- type of hemolysis: gamma
- incubation period: 2-3 days
pigmentation
- @ref: 117247
- production: no
- name: Pyocyanin
Culture and growth conditions
culture medium
@ref | name | growth | link | composition |
---|---|---|---|---|
3094 | COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) | yes | https://mediadive.dsmz.de/medium/693 | Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base |
3094 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
37582 | MEDIUM 72- for trypto casein soja agar | yes | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |
117247 | CIP Medium 72 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72 |
culture temp
@ref | growth | type | temperature | range |
---|---|---|---|---|
3094 | positive | growth | 28 | mesophilic |
37582 | positive | growth | 30 | mesophilic |
67770 | positive | growth | 30 | mesophilic |
117247 | positive | growth | 5-37 | |
117247 | no | growth | 41 | thermophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 117247
- oxygen tolerance: obligate aerobe
antibiogram
@ref | medium | incubation temperature | oxygen condition | Penicillin G | oxacillin | ampicillin | ticarcillin | mezlocillin | cefalotin | cefazolin | cefotaxime | aztreonam | imipenem | tetracycline | chloramphenicol | gentamycin | amikacin | vancomycin | erythromycin | lincomycin | ofloxacin | norfloxacin | colistin | pipemidic acid | nitrofurantoin | bacitracin | polymyxin b | kanamycin | neomycin | doxycycline | ceftriaxone | clindamycin | fosfomycin | moxifloxacin | linezolid | nystatin | quinupristin/dalfopristin | teicoplanin | piperacillin/tazobactam |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3094 | Mueller-Hinton Agar | 30 | aerob | 0 | 0 | 0 | 0 | 22-24 | 0 | 0 | 22 | 20 | 18 | 10 | 20-22 | 0 | 10 | 0 | 0 | 0 | 20 | 20 | 0 | 12 | 0 | 0 | 0 | 12 | 10 | 20 | 22 | 0 | 0 | 26 | 0 | 0 | 10 | 0 | 28 |
3094 | Mueller-Hinton Agar | 30 | aerob | 0 | 0 | 0 | 0 | 22-24 | 0 | 0 | 22 | 20 | 18 | 10 | 20-22 | 0 | 10 | 0 | 0 | 0 | 20 | 20 | 0 | 12 | 0 | 0 | 0 | 12 | 10 | 20 | 22 | 0 | 0 | 26 | 0 | 0 | 10 | 0 | 28 |
3094 | Mueller Hinton | 30 | aerob | 0 | 0 | 0 | 0 | 22 | 0 | 0 | 20 | 20 | 14 | 6 | 20-22 | 0 | 10 | 0 | 6 | 0 | 18-20 | 16-18 | 0 | 10-12 | 0 | 0 | 0 | 14-16 | 10 | 20 | 22 | 0 | 0 | 22-24 | 0 | 0 | 8-10 | 0 | 28-30 |
spore formation
@ref | spore formation | confidence |
---|---|---|
69481 | no | 100 |
69480 | no | 99.981 |
compound production
- @ref: 3094
- compound: cepabactin
halophily
@ref | salt | growth | tested relation | concentration |
---|---|---|---|---|
117247 | NaCl | positive | growth | 0-4 % |
117247 | NaCl | no | growth | 6 % |
117247 | NaCl | no | growth | 8 % |
117247 | NaCl | no | growth | 10 % |
metabolite utilization
@ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
---|---|---|---|---|
68369 | 25115 | malate | + | assimilation |
68369 | 17128 | adipate | + | assimilation |
68369 | 27689 | decanoate | + | assimilation |
68369 | 24265 | gluconate | + | assimilation |
68369 | 59640 | N-acetylglucosamine | + | assimilation |
68369 | 16899 | D-mannitol | + | assimilation |
68369 | 16024 | D-mannose | + | assimilation |
68369 | 30849 | L-arabinose | + | assimilation |
68369 | 17634 | D-glucose | + | assimilation |
68369 | 16199 | urea | - | hydrolysis |
68369 | 29016 | arginine | - | hydrolysis |
68369 | 27897 | tryptophan | - | energy source |
68369 | 17632 | nitrate | - | reduction |
117247 | 16947 | citrate | + | carbon source |
117247 | 4853 | esculin | + | hydrolysis |
117247 | 17632 | nitrate | - | reduction |
117247 | 16301 | nitrite | - | reduction |
117247 | 15882 | phenol | + | degradation |
117247 | 17632 | nitrate | - | respiration |
antibiotic resistance
- @ref: 117247
- metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
- is antibiotic: yes
- is sensitive: no
- is resistant: yes
metabolite production
@ref | Chebi-ID | metabolite | production |
---|---|---|---|
68369 | 35581 | indole | no |
117247 | 35581 | indole | no |
metabolite tests
- @ref: 68369
- Chebi-ID: 35581
- metabolite: indole
- indole test: -
enzymes
@ref | value | activity | ec |
---|---|---|---|
3094 | catalase | + | 1.11.1.6 |
3094 | cytochrome-c oxidase | + | 1.9.3.1 |
68382 | alpha-fucosidase | - | 3.2.1.51 |
68382 | alpha-mannosidase | - | 3.2.1.24 |
68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 |
68382 | beta-glucosidase | + | 3.2.1.21 |
68382 | alpha-glucosidase | - | 3.2.1.20 |
68382 | beta-glucuronidase | - | 3.2.1.31 |
68382 | beta-galactosidase | - | 3.2.1.23 |
68382 | alpha-galactosidase | - | 3.2.1.22 |
68382 | naphthol-AS-BI-phosphohydrolase | + | |
68382 | acid phosphatase | + | 3.1.3.2 |
68382 | alpha-chymotrypsin | - | 3.4.21.1 |
68382 | trypsin | - | 3.4.21.4 |
68382 | cystine arylamidase | - | 3.4.11.3 |
68382 | valine arylamidase | - | |
68382 | leucine arylamidase | + | 3.4.11.1 |
68382 | lipase (C 14) | + | |
68382 | esterase lipase (C 8) | + | |
68382 | esterase (C 4) | + | |
68382 | alkaline phosphatase | + | 3.1.3.1 |
68369 | urease | - | 3.5.1.5 |
68369 | arginine dihydrolase | - | 3.5.3.6 |
117247 | oxidase | + | |
117247 | beta-galactosidase | + | 3.2.1.23 |
117247 | alcohol dehydrogenase | - | 1.1.1.1 |
117247 | gelatinase | - | |
117247 | amylase | - | |
117247 | DNase | - | |
117247 | caseinase | - | 3.4.21.50 |
117247 | catalase | + | 1.11.1.6 |
117247 | tween esterase | + | |
117247 | gamma-glutamyltransferase | + | 2.3.2.2 |
117247 | lecithinase | + | |
117247 | lipase | - | |
117247 | lysine decarboxylase | + | 4.1.1.18 |
117247 | ornithine decarboxylase | - | 4.1.1.17 |
117247 | protease | - | |
117247 | tryptophan deaminase | - | |
117247 | urease | - | 3.5.1.5 |
API zym
@ref | Control | Alkaline phosphatase | Esterase | Esterase Lipase | Lipase | Leucine arylamidase | Valine arylamidase | Cystine arylamidase | Trypsin | alpha- Chymotrypsin | Acid phosphatase | Naphthol-AS-BI-phosphohydrolase | alpha- Galactosidase | beta- Galactosidase | beta- Glucuronidase | alpha- Glucosidase | beta- Glucosidase | N-acetyl-beta- glucosaminidase | alpha- Mannosidase | alpha- Fucosidase |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
117247 | - | + | + | + | + | + | - | - | - | - | + | + | - | - | - | - | + | + | - | - |
API 20NE
@ref | NO3 | TRP | GLU_ Ferm | ADH Arg | URE | ESC | GEL | PNPG | GLU_ Assim | ARA | MNE | MAN | NAG | MAL | GNT | CAP | ADI | MLT | CIT | PAC | OX |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
3094 | - | - | + | - | - | +/- | - | + | + | + | + | + | + | - | + | + | + | + | + | + | + |
3094 | - | - | - | - | - | + | - | + | + | + | + | + | + | - | + | + | + | + | + | + | + |
3094 | - | - | - | - | - | + | - | + | + | + | + | + | + | - | + | + | + | + | + | + | - |
3094 | - | - | - | - | - | + | - | + | + | + | + | + | + | +/- | + | + | + | + | + | + | + |
3094 | - | - | - | - | - | + | + | + | + | + | + | + | + | - | + | + | + | + | + | + | + |
3094 | - | - | - | - | - | - | - | + | + | + | + | + | + | - | + | + | + | + | + | + | + |
3094 | - | - | - | - | - | + | - | + | + | + | + | + | + | - | + | + | + | + | + | + | |
3094 | - | - | - | - | - | + | - | + | + | + | + | + | + | - | + | + | + | + | +/- | + | |
3094 | - | - | - | - | - | + | + | + | + | + | + | + | + | - | + | + | + | + | + | + | |
3094 | - | - | - | - | - | + | - | + | + | + | + | + | + | - | + | + | + | + | + | + | + |
3094 | - | - | - | - | - | +/- | - | + | + | + | + | + | + | +/- | + | + | + | + | + | + | + |
3094 | - | - | - | - | - | + | - | + | + | + | + | + | + | - | + | + | + | + | + | + | + |
API biotype100
@ref | GLU | FRU | GAL | TRE | MNE | SBE | MEL | SAC | RAF | MTE | MAL | LAC | LTE | MbGa | MaGa | CEL | GEN | MbGu | ESC | RIB | ARA | XYL | PLE | RHA | FUC | MLZ | DARL | LARL | XLT | DUL | TAG | GLY | INO | MAN | MTL | TUR | SOR | ADO | HBG | LYX | ERY | MDG | 3MDG | SAT | MUC | LTAT | DTAT | MTAT | DMLT | LMLT | CATE | TATE | TTE | CIT | GRT | GAT | 2KG | 5KG | TRY | NAG | GNT | PAC | PAT | pOBE | QAT | GTE | mOBE | BAT | PPAT | CMT | TGE | BET | PCE | ABT | HIN | LAT | CAP | CYT | HIS | SUC | FUM | GRE | GYT | AVT | ETN | TTN | GLN | ITA | 3OBU | APT | GTT | PRO | DALA | LALA | SER | MNT | PROP | TYR | 2KT |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
117247 | + | + | + | + | + | - | - | + | - | - | - | - | - | + | - | + | + | + | + | + | + | + | - | - | + | - | + | + | + | + | + | + | + | + | - | - | + | + | - | + | - | - | - | + | + | + | - | - | + | + | + | + | - | + | + | + | + | + | - | + | + | + | + | + | + | + | + | + | - | - | - | + | + | + | + | + | + | + | - | + | + | + | + | + | + | + | + | - | + | + | + | + | + | + | + | + | + | + | + |
Isolation, sampling and environmental information
isolation
@ref | sample type |
---|---|
3094 | Onion |
67770 | Onion |
117247 | Onion |
isolation source categories
Cat1 | Cat2 | Cat3 |
---|---|---|
#Host | #Plants | #Herbaceous plants (Grass,Crops) |
#Host Body-Site | #Plant | #Root (Rhizome) |
taxonmaps
- @ref: 69479
- File name: preview.99_198.png
- url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_12;96_18;97_18;98_21;99_198&stattab=map
- Last taxonomy: Burkholderia
- 16S sequence: U96927
- Sequence Identity:
- Total samples: 5054
- soil counts: 1055
- aquatic counts: 564
- animal counts: 1930
- plant counts: 1505
Safety information
risk assessment
@ref | pathogenicity human | pathogenicity animal | pathogenicity plant | biosafety level | biosafety level comment |
---|---|---|---|---|---|
3094 | yes | yes | yes | 2 | Risk group (German classification) |
117247 | 2 | Risk group (French classification) |
Sequence information
16S sequences
@ref | description | accession | length | database | NCBI tax ID |
---|---|---|---|---|---|
20218 | Burkholderia cepacia strain ATCC 25416 16S ribosomal RNA gene, partial sequence | AY728197 | 687 | ena | 983594 |
20218 | Burkholderia cepacia gene for 16S rRNA, partial sequence, strain: ATCC 25416 (= EY 645) | D13046 | 158 | ena | 983594 |
20218 | Burkholderia cepacia ATCC 25416 strain LMG 1222 16S ribosomal RNA gene, partial sequence | HQ849078 | 1124 | ena | 983594 |
20218 | P.cepacia 16S ribosomal RNA, complete cds | M22518 | 1473 | ena | 292 |
20218 | Burkholderia cepacia 16S ribosomal RNA gene, partial sequence | U96927 | 1610 | ena | 983594 |
3094 | Burkholderia cepacia strain ATCC25416 16S ribosomal RNA gene, partial sequence | AF097530 | 1462 | ena | 983594 |
Genome sequences
@ref | description | accession | assembly level | database | NCBI tax ID |
---|---|---|---|---|---|
66792 | Burkholderia cepacia ATCC 25416 UCB 717 | GCA_001411495 | complete | ncbi | 983594 |
66792 | Burkholderia cepacia ATCC 25416 | GCA_006094315 | complete | ncbi | 983594 |
66792 | Burkholderia cepacia ATCC 25416 | GCA_003546465 | complete | ncbi | 983594 |
66792 | Burkholderia cepacia NBRC 14074 | GCA_001528845 | contig | ncbi | 292 |
66792 | Burkholderia cepacia ATCC 25416 | GCA_000473485 | scaffold | ncbi | 983594 |
66792 | Burkholderia cepacia ATCC 25416 | 983594.7 | wgs | patric | 983594 |
66792 | Burkholderia cepacia ATCC 25416 | 983594.16 | complete | patric | 983594 |
66792 | Burkholderia cepacia ATCC 25416 | 983594.32 | complete | patric | 983594 |
66792 | Burkholderia cepacia ATCC 25416 | 983594.35 | complete | patric | 983594 |
66792 | Burkholderia cepacia ATCC 25416 strain UCB 717 | 983594.23 | plasmid | patric | 983594 |
66792 | Burkholderia cepacia strain NBRC 14074 | 292.70 | wgs | patric | 292 |
66792 | Burkholderia cepacia strain NCTC10743 | 292.148 | wgs | patric | 292 |
66792 | Burkholderia cepacia ATCC 25416 | 2509276048 | draft | img | 983594 |
66792 | Burkholderia cepacia ATCC 25416 | 2912464834 | complete | img | 983594 |
66792 | Burkholderia cepacia NBRC 14074 | 2731957558 | draft | img | 292 |
66792 | Burkholderia cepacia NCTC 10743 | 2916573127 | draft | img | 292 |
67770 | Burkholderia cepacia NCTC10743 | GCA_900446175 | contig | ncbi | 292 |
GC content
- @ref: 3094
- GC-content: 67.8
- method: Buoyant density centrifugation (BD)
Genome-based predictions
predictions
trait | prediction | confidence | training_data |
---|---|---|---|
spore-forming | no | 100 | no |
flagellated | no | 84.168 | no |
gram-positive | no | 98.322 | no |
anaerobic | no | 98.537 | no |
aerobic | yes | 90.376 | no |
halophile | no | 93.827 | no |
spore-forming | no | 91.874 | no |
glucose-util | yes | 91.161 | yes |
thermophile | no | 99.551 | no |
motile | yes | 85.402 | no |
glucose-ferment | no | 87.225 | no |
External links
@ref: 3094
culture collection no.: DSM 7288, ATCC 25416, DSM 9897, ICPB PC25, NCTC 10743, JCM 5964, BCRC 13208, CCUG 12691, CCUG 13226, CECT 4137, CGMCC 1.1813, CGMCC 1.3393, CIP 80.24, IFO 14074, KCTC 2966, LMG 1222, NBRC 14074, NRRL B-14810, VTT E-94512, ACM 1771
straininfo link
@ref | straininfo |
---|---|
71550 | 3962 |
71551 | 312263 |
literature
topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
---|---|---|---|---|---|---|---|---|
Metabolism | 2533244 | Cepabactin from Pseudomonas cepacia, a new type of siderophore. | Meyer JM, Hohnadel D, Halle F | J Gen Microbiol | 10.1099/00221287-135-6-1479 | 1989 | Iron/metabolism, Iron Chelating Agents/*isolation & purification/pharmacology, Phenols/isolation & purification, Pseudomonas/*analysis/drug effects/growth & development, Siderophores, Structure-Activity Relationship, Succinates/metabolism, Succinic Acid, *Thiazoles | Enzymology |
Metabolism | 2865249 | Occurrence of succinyl derivatives in the catabolism of arginine in Pseudomonas cepacia. | Vander Wauven C, Stalon V | J Bacteriol | 10.1128/jb.164.2.882-886.1985 | 1985 | Acyltransferases/metabolism, Arginine/analogs & derivatives/*metabolism, Glutamates/metabolism, Glutamic Acid, Ornithine/analogs & derivatives/metabolism, Oxamic Acid/pharmacology, Pseudomonas/enzymology/growth & development/*metabolism, Succinates/metabolism | Enzymology |
Phenotype | 7212403 | [Phenotype characteristics of 100 strains of Pseudomonas cepacia. Proposition of a biovars classification (author's transl)]. | Richard C, Monteil H, Megraud F, Chatelain R, Laurent B | Ann Biol Clin (Paris) | 1981 | Humans, Microbial Sensitivity Tests, Phenotype, Pseudomonas/*classification/genetics/metabolism | Phylogeny | |
Enzymology | 7476209 | A physical genome map of the Burkholderia cepacia type strain. | Rodley PD, Romling U, Tummler B | Mol Microbiol | 10.1111/j.1365-2958.1995.mmi_17010057.x | 1995 | Base Sequence, Burkholderia cepacia/*genetics, Electrophoresis, Gel, Pulsed-Field/methods, Electrophoresis, Gel, Two-Dimensional/methods, *Genome, Bacterial, Molecular Sequence Data, Operon/genetics, Replicon/genetics, *Restriction Mapping | Genetics |
Metabolism | 7576529 | Isolation of uracil auxotrophs from Burkholderia cepacia ATCC 25416. | Li K, West TP | Lett Appl Microbiol | 10.1111/j.1472-765x.1995.tb01074.x | 1995 | Aspartate Carbamoyltransferase/metabolism, Burkholderia cepacia/enzymology/*metabolism, Cycloserine/metabolism, Dihydroorotase/metabolism, Ethyl Methanesulfonate, Mutagenesis, Orotate Phosphoribosyltransferase/metabolism, Orotidine-5'-Phosphate Decarboxylase/metabolism, Pyrimidine Nucleotides/metabolism, Pyrimidines/biosynthesis, Uracil/*metabolism | Phylogeny |
Metabolism | 7576530 | Pyrimidine synthesis in Burkholderia cepacia ATCC 25416. | Li K, West TP | Lett Appl Microbiol | 10.1111/j.1472-765x.1995.tb01075.x | 1995 | Aspartate Carbamoyltransferase/antagonists & inhibitors/metabolism, Burkholderia cepacia/*enzymology/metabolism, Cytidine Deaminase/metabolism, Cytosine Deaminase, Diphosphates/pharmacology, Enzyme Inhibitors/pharmacology, Nucleoside Deaminases/metabolism, Nucleotides/pharmacology, Pyrimidines/*biosynthesis, Uracil/metabolism, Uridine Phosphorylase/metabolism | Enzymology |
Metabolism | 7580051 | Ornibactin production and transport properties in strains of Burkholderia vietnamiensis and Burkholderia cepacia (formerly Pseudomonas cepacia). | Meyer JM, Van VT, Stintzi A, Berge O, Winkelmann G | Biometals | 10.1007/BF00141604 | 1995 | Biological Transport, Burkholderia/classification/genetics/*metabolism, Iron/metabolism, Oligopeptides/*biosynthesis, Ornithine/metabolism, Siderophores/*biosynthesis | Biotechnology |
Phylogeny | 8995797 | Systematic study of the genus Vogesella gen. nov. and its type species, Vogesella indigofera comb. nov. | Grimes DJ, Woese CR, MacDonell MT, Colwell RR | Int J Syst Bacteriol | 10.1099/00207713-47-1-19 | 1997 | Bacteriological Techniques, Culture Media/chemistry/metabolism, DNA, Bacterial/analysis, Molecular Sequence Data, Phylogeny, Pseudomonas/*classification/growth & development/ultrastructure, RNA, Ribosomal, 16S/analysis, RNA, Ribosomal, 5S/analysis | Genetics |
Enzymology | 9047353 | Cloning and expression of the major porin protein gene opcP of Burkholderia (formerly Pseudomonas) cepacia in Escherichia coli. | Tsujimoto H, Gotoh N, Yamagishi J, Oyamada Y, Nishino T | Gene | 10.1016/s0378-1119(96)00692-0 | 1997 | Amino Acid Sequence, Bacterial Outer Membrane Proteins/*biosynthesis/*genetics, Base Sequence, Burkholderia cepacia/*genetics, Cloning, Molecular, Escherichia coli/*genetics, Molecular Sequence Data, Recombinant Proteins/biosynthesis/genetics, Sequence Analysis, DNA, Sequence Homology, Amino Acid | Genetics |
Enzymology | 9304858 | Mobilization, cloning, and sequence determination of a plasmid-encoded polygalacturonase from a phytopathogenic Burkholderia (Pseudomonas) cepacia. | Gonzalez CF, Pettit EA, Valadez VA, Provin EM | Mol Plant Microbe Interact | 10.1094/MPMI.1997.10.7.840 | 1997 | Amino Acid Sequence, Base Sequence, Burkholderia cepacia/*enzymology/genetics/pathogenicity, Cloning, Molecular, DNA, Bacterial, Molecular Sequence Data, Mutagenesis, Site-Directed, Plasmids, Polygalacturonase/*genetics, Sequence Homology, Amino Acid | Genetics |
Phylogeny | 9861699 | Isolation and characterisation of disodium (4-amino-4-deoxy-beta-L- arabinopyranosyl)-(1-->8)-(D-glycero-alpha-D-talo-oct-2-ulopyranosylona te)- (2-->4)-(methyl 3-deoxy-D-manno-oct-2-ulopyranosid)onate from the lipopolysaccharide of Burkholderia cepacia. | Isshiki Y, Kawahara K, Zahringer U | Carbohydr Res | 10.1016/s0008-6215(98)00179-7 | 1998 | Burkholderia cepacia/*chemistry, Carbohydrate Sequence, Chromatography, High Pressure Liquid, Lipopolysaccharides/*chemistry, Magnetic Resonance Spectroscopy, Methylation, Molecular Sequence Data, Polysaccharides, Bacterial/chemistry/*isolation & purification | Genetics |
Phylogeny | 10488171 | Development of rRNA-based PCR assays for identification of Burkholderia cepacia complex isolates recovered from cystic fibrosis patients. | LiPuma JJ, Dulaney BJ, McMenamin JD, Whitby PW, Stull TL, Coenye T, Vandamme P | J Clin Microbiol | 10.1128/JCM.37.10.3167-3170.1999 | 1999 | Base Sequence, Burkholderia cepacia/classification/*isolation & purification, Cystic Fibrosis/*microbiology, Humans, Molecular Sequence Data, Polymerase Chain Reaction/*methods, RNA, Ribosomal, 16S/*genetics, RNA, Ribosomal, 23S/*genetics, Sensitivity and Specificity | Pathogenicity |
Metabolism | 10696871 | Role of cytosine deaminase and beta-alanine-pyruvate transaminase in pyrimidine base catabolism by Burkholderia cepacia. | West TP | Antonie Van Leeuwenhoek | 10.1023/a:1002062202282 | 2000 | Burkholderia cepacia/enzymology/growth & development/*metabolism, Culture Media, Cytosine Deaminase, Nucleoside Deaminases/*metabolism, Pyrimidines/*metabolism, Transaminases/*metabolism, beta-Alanine-Pyruvate Transaminase | Cultivation |
Enzymology | 12427755 | Construction of a deep-rough mutant of Burkholderia cepacia ATCC 25416 and characterization of its chemical and biological properties. | Gronow S, Noah C, Blumenthal A, Lindner B, Brade H | J Biol Chem | 10.1074/jbc.M206942200 | 2002 | Base Sequence, Burkholderia cepacia/chemistry/enzymology/genetics/*physiology, Cloning, Molecular, DNA Primers, Electrophoresis, Polyacrylamide Gel, Glycosyltransferases/genetics, Humans, Macrophages/metabolism/microbiology, Molecular Sequence Data, *Mutation, Oligosaccharides/chemistry, Spectrometry, Mass, Electrospray Ionization, Transferases/genetics, Tumor Necrosis Factor-alpha/metabolism | Pathogenicity |
Metabolism | 12620866 | Quorum-sensing system and stationary-phase sigma factor (rpoS) of the onion pathogen Burkholderia cepacia genomovar I type strain, ATCC 25416. | Aguilar C, Bertani I, Venturi V | Appl Environ Microbiol | 10.1128/AEM.69.3.1739-1747.2003 | 2003 | 4-Butyrolactone/*analogs & derivatives/metabolism, Bacterial Proteins/chemistry/*genetics/metabolism, Burkholderia cepacia/genetics/*growth & development/*pathogenicity, *Gene Expression Regulation, Bacterial, *Ligases, Molecular Sequence Data, Onions/*microbiology, Plant Diseases/microbiology, Sequence Analysis, DNA, Sigma Factor/*genetics/metabolism, *Signal Transduction | Genetics |
Metabolism | 12686627 | Transmissible Burkholderia cepacia genomovar IIIa strains bind and convert monomeric iron(III) protoporphyrin IX into the mu-oxo oligomeric form. | Smalley JW, Charalabous P, Hart CA, Silver J | Microbiology (Reading) | 10.1099/mic.0.26160-0 | 2003 | Bacterial Outer Membrane Proteins/metabolism, Burkholderia Infections/epidemiology/microbiology/transmission, Burkholderia cepacia/classification/genetics/*metabolism, Carrier Proteins, Catalase, Cystic Fibrosis/epidemiology/*microbiology, Dimerization, *Disease Outbreaks, Heme-Binding Proteins, Hemeproteins, Humans, Hydrogen-Ion Concentration, Iron/metabolism, Protein Binding, Protoporphyrins/*metabolism | Pathogenicity |
Metabolism | 14563881 | Identification of quorum-sensing-regulated genes of Burkholderia cepacia. | Aguilar C, Friscina A, Devescovi G, Kojic M, Venturi V | J Bacteriol | 10.1128/JB.185.21.6456-6462.2003 | 2003 | Bacterial Proteins/*metabolism, Burkholderia cepacia/*genetics/metabolism, Cloning, Molecular, Gene Expression Regulation, Bacterial/genetics, *Genes, Bacterial, Homoserine/*analogs & derivatives/biosynthesis, Lactones, Promoter Regions, Genetic, Transcription, Genetic | Enzymology |
Pathogenicity | 16388025 | Identification of an RTX determinant of Burkholderia cenocepacia J2315 by subtractive hybridization. | Whitby PW, VanWagoner TM, Taylor AA, Seale TW, Morton DJ, LiPuma JJ, Stull TL | J Med Microbiol | 10.1099/jmm.0.46138-0 | 2006 | Amino Acid Sequence, Bacterial Toxins/chemistry/*genetics, Burkholderia Infections/microbiology, Burkholderia cepacia/genetics/metabolism, Burkholderia cepacia complex/classification/*genetics/isolation & purification/metabolism, Environmental Microbiology, Hemagglutination Tests, Hemagglutinins/chemistry/*genetics/metabolism, Hemolysis, Humans, Molecular Sequence Data, Nucleic Acid Hybridization/methods, Operon, Repetitive Sequences, Nucleic Acid/*genetics, Sequence Alignment | Metabolism |
Enzymology | 17493828 | Isolation, heterologous expression and characterization of an endo-polygalacturonase produced by the phytopathogen Burkholderia cepacia. | Massa C, Degrassi G, Devescovi G, Venturi V, Lamba D | Protein Expr Purif | 10.1016/j.pep.2007.03.019 | 2007 | Amino Acid Sequence, Burkholderia cepacia/*enzymology, Electrophoresis, Polyacrylamide Gel, Enzyme Stability, Escherichia coli/metabolism, Molecular Sequence Data, Polygalacturonase/chemistry/*isolation & purification/metabolism, Recombinant Proteins/isolation & purification | Phylogeny |
Cultivation | 20730523 | Influence of Legionella pneumophila and other water bacteria on the survival and growth of Acanthamoeba polyphaga. | Anacarso I, Guerrieri E, Bondi M, de Niederhausern S, Iseppi R, Sabia C, Contri M, Borella P, Messi P | Arch Microbiol | 10.1007/s00203-010-0618-0 | 2010 | Acanthamoeba/*growth & development/*microbiology, Coculture Techniques, Culture Media, Endocytosis, Legionella pneumophila/*growth & development, Phagosomes/*microbiology, Pseudomonas aeruginosa/growth & development, Trophozoites/growth & development, *Water Microbiology | |
Metabolism | 25860696 | Application of lipase from Burkholderia cepacia in the degradation of agro-industrial effluent. | Mello Bueno PR, de Oliveira TF, Castiglioni GL, Soares Junior MS, Ulhoa CJ | Water Sci Technol | 10.2166/wst.2015.037 | 2015 | Bacterial Proteins/chemistry/*metabolism, Burkholderia cepacia/*metabolism, Food-Processing Industry, Hydrogen-Ion Concentration, Hydrolysis, Industrial Waste/*analysis, Lipase/chemistry/*metabolism, Solanum tuberosum/*chemistry, Temperature | Biotechnology |
30112155 | Antibacterial effects of microbial synthesized silver-copper nanoalloys on Escherichia coli, Burkholderia cepacia, Listeria monocytogenes and Brucella abortus. | Mohammadi S, Jazani NH, Kouhkan M, Babaganjeh LA | Iran J Microbiol | 2018 | ||||
30708508 | First Report of Bacterial Leaf Streak of Strelitzia reginae Caused by Burkholderia cepacia. | You CP, Xiang MM, Zhang YX | Plant Dis | 10.1094/PDIS-02-13-0205-PDN | 2014 | |||
Enzymology | 32691184 | Enantioselective synthesis of a chiral intermediate of himbacine analogs by Burkholderia cepacia lipase A. | Chen Y, Gao F, Zheng G, Gao S | Biotechnol Lett | 10.1007/s10529-020-02969-z | 2020 | Alkaloids/*biosynthesis/*chemistry/genetics, Burkholderia cepacia/*enzymology, Catalysis, Escherichia coli/genetics, Furans/*chemistry, Gene Expression/genetics, Naphthalenes/*chemistry, Piperidines/*chemistry, Stereoisomerism, Sterol Esterase/*chemistry | |
Pathogenicity | 32799627 | Outer membrane vesicles produced by Burkholderia cepacia cultured with subinhibitory concentrations of ceftazidime enhance pro-inflammatory responses. | Kim SY, Kim MH, Son JH, Kim SI, Yun SH, Kim K, Kim S, Shin M, Lee JC | Virulence | 10.1080/21505594.2020.1802193 | 2020 | A549 Cells, Animals, Anti-Bacterial Agents/*pharmacology, Bacterial Outer Membrane/drug effects/immunology, Burkholderia cepacia/*drug effects/immunology/*pathogenicity, Ceftazidime/*pharmacology, Female, Humans, *Inflammation, Mice, Mice, Inbred BALB C, Microbial Sensitivity Tests, Secretory Vesicles/*drug effects/immunology |
Reference
@id | authors | catalogue | doi/url | title | journal | pubmed |
---|---|---|---|---|---|---|
3094 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 7288) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-7288 | |||
20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P. | 10.1016/j.syapm.2013.11.002 | StrainInfo introduces electronic passports for microorganisms. | Syst Appl Microbiol. 37: 42-50 2014 | 24321274 | |
37582 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/11117 | ||||
66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||||
68369 | Automatically annotated from API 20NE | |||||
68382 | Automatically annotated from API zym | |||||
69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich. | https://microbeatlas.org/ | MicrobeAtlas 1.0 beta | |||
69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
71550 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID3962.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
71551 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID312263.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
117247 | Curators of the CIP | Collection of Institut Pasteur (CIP 80.24) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2080.24 |